Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
fosfomycin resistance glutathione transferase FosA
Overview
| Candidate |
| R93A | - | - | E. coli | Fosfomycin | Reslit | Candidate |
| W34A | - | - | E. coli | Fosfomycin | Reslit | Candidate |
| W34H | - | - | E. coli | Fosfomycin | Reslit | Candidate |
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| fosA5 | Card DatabaseResFinder Database | 2 | FOSFOMYCIN | Klebsiella pneumoniae +1 | - | 2008 | EU195449 | AJE60855.1 |
| FosA | Card DatabaseReference Gene CatalogResFinder Database | 3 | FOSFOMYCIN | Serratia marcescens +1 | - | 1990 | M85195.1 | AAA98399.1 |
| fosA | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 196 | FOSFOMYCIN, Fosfomycin | Serratia marcescens, Klebsiella sp. 4_1_44FAA, Pseudomonas aeruginosa, Klebsiella sp. MS 92-3, Enterobacter mori LMG 25706, Klebsiella ornithinolytica 10-5246, Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 | ||||
| fosA3 | ResFinder Database | 1 | FOSFOMYCIN | Escherichia coli | - | 2010 | AB522970 | - |
| FosA3 | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 109 | Fosfomycin, FOSFOMYCIN | Escherichia coli +37 | Japan, China, Taiwan, Pennsylvania, USA, France, United States|Japan, Europe|United States|China|Brazil|Australia|Spain|Germany|Iran|Switzerland|France|Portugal|Japan|Belgium|South Korea|Vietnam|Taiwan|India|Egypt|South Africa|Algeria, China|Switzerland|Nepal|France|South Africa|Lebanon|India|Angola, Czechia|Poland|Germany|Brazil|China, South Korea, Brazil, China|Guangzhou, Spain, Thailand, Canada, Europe, England|Wales, Switzerland|France|Lebanon|Unknown|Nepal|South Africa|China|Egypt|Kuwait, Shandong province, Paraná, Brazil, Spain|Peru, Abuja, Nigeria, Peru, Italy, Mexico, Zhejiang, China|China, Lebanon, Chile, China|USA|Canada|Germany|Brazil|France|Japan|Ecuador|India|Australia|Taiwan|Hungary|Caribbean|South Africa, Egypt, China|Bolivia|United States|Canada|New Zealand, Tunisia, Curitiba, Brazil, Iraq, Global, Guangdong Province, China, Bangladesh|Brazil|Greece|Italy|Kenya|South Africa|Thailand|Uganda|Vietnam, Guangdong, China, South Africa, Ecuador, Zimbabwe, United States, China|Anhui|Hainan|Sichuan, Shanghai|Minhang District, North Carolina, USA, South India, China|North America|Asia|Europe|Africa|Other, Harare, Zimbabwe, Sichuan, China, Asia|China, United Arab Emirates | |||
| fosA2 | ResFinder Database | 1 | FOSFOMYCIN | Enterobacter cloacae | - | 2011 | EU487198 | - |
| FosA2 | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 9 | FOSFOMYCIN, Fosfomycin | Enterobacter cloacae +6 | United States, Shanxi Province, China, India, Northern Iran, Normandy|France | 2011, 2020, 2024, 2025 | EU487198.1 | ACC85616.1 |
| FosA4 | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 16 | FOSFOMYCIN, Fosfomycin | Escherichia coli +4 | Singapore, Italy, Egypt, Switzerland|France|Lebanon|Unknown|Nepal|South Africa|China|Egypt|Kuwait, Canada|Switzerland|United States, Iraq, Bangladesh, Pakistan, United Arab Emirates | 2014, 2018, 2020, 2021, 2022, 2023, 2024, 2025 | AB908992.1 | BAP18892.1 |
| fosA4 | ResFinder Database | 1 | FOSFOMYCIN | Escherichia coli | - | 2014 | AB908992 | - |
| FosA5 | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 23 | FOSFOMYCIN, Fosfomycin | Klebsiella pneumoniae +4 | France, China, UK, Brazil, Middle East|Egypt, Caribbean, Egypt, Brazilian Amazon Region, Bangladesh|Brazil|Greece|Italy|Kenya|South Africa|Thailand|Uganda|Vietnam, Thailand, California, Europe | 2015, 2017, 2020, 2021, 2022, 2023, 2024, 2025 | EU195449.1 | ABY74375.1 |
| FosA6 | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 27 | FOSFOMYCIN, Fosfomycin | Escherichia coli +7 | USA, UK, China, Shanghai, China, Sudan, Lebanon, Oman, Switzerland, Thailand, Ecuador, Europe|Czech Republic, Calabria|Italy | 2016, 2017, 2020, 2021, 2022, 2023, 2024, 2025 | KU254579.1 | AMQ12811.1 |
| fos A | Reslit | 7 | Fosfomycin | Klebsiella pneumoniae +4 | Cameroon, South Africa, Romania, Pakistan, Edo state, Nigeria, Southeast Nigeria | 2018, 2019, 2020, 2021, 2022, 2025 | PDVM00000000|PDVF00000000|PDVG00000000|PDVC00000000|PDVE00000000|PDVU00000000|PDVD00000000 | - |
| FosA9 | Reference Gene CatalogReslit | 3 | Fosfomycin, FOSFOMYCIN | Klebsiella pneumoniae +2 | India | 2018, 2019 | MNPB00000000|MNPC00000000|MNPD00000000|MNPG00000000|MNPH00000000|MNPF00000000|MNPE00000000|MNPA00000000 | SSL73007.1 |
| FosA10 | Reference Gene CatalogResFinder DatabaseReslit | 5 | Fosfomycin, FOSFOMYCIN | Klebsiella pneumoniae +4 | India, Pakistan, Czech Republic | 2018, 2020, 2023 | MNPB00000000|MNPC00000000|MNPD00000000|MNPG00000000|MNPH00000000|MNPF00000000|MNPE00000000|MNPA00000000 | EHL91134.1 |
| fosA5/6 | Reslit | 1 | Fosfomycin | Klebsiella pneumoniae | Brazil | 2019 | PYWQ00000000|PYWR00000000|PYWS00000000|PYWT00000000|PYWU00000000|PYWV00000000|PYWV00000000 | - |
| fosA-like | Reslit | 1 | Fosfomycin | Klebsiella pneumoniae | Brazilian Amazon | 2020 | JAAQON000000000.1 | - |
| fos A3 | Reslit | 1 | Fosfomycin | Escherichia coli | Italy | 2022 | ERS12773674|ERS12773675|ERS12773676|ERS12773677|ERS12773678|ERS12773679|ERS12773680|ERS12773681|ERS12773682|ERS12773683|ERS12773684|ERS12773685|ERS12773686|ERS12773687|ERS12773688|ERS12773689|ERS12773690|ERS12773691|ERS12773692|ERS12773693|ERS12773694|ERS12773695|ERS12773696|ERS12773697|ERS12773698|ERS12841964|ERS12841965|ERS12841966|ERS12841967|ERS12841968|ERS12841969|ERS12841970|ERS12841971|ERS12841972|ERS12841973|ERS12841974|ERS12413439|Ers12413440|CP023897|CP024806|KX523903|MG570092|KX894452|CP026476|MG228426|NZ_CP040399.1 | - |
| fosA6 | ResFinder Database | 1 | FOSFOMYCIN | Escherichia coli | - | - | KU254579 | - |
Complete nucleotide sequence of pKP96, a 67 850 bp multiresistance plasmid encoding qnrA1, aac(6')-Ib-cr and blaCTX-M-24 from Klebsiella pneumoniae.
Nucleotide sequence and intracellular location of the product of the fosfomycin resistance gene from transposon Tn2921.
Nucleotide sequence and intracellular location of the product of the fosfomycin resistance gene from transposon Tn2921.
Nucleotide sequence and intracellular location of the product of the fosfomycin resistance gene from transposon Tn2921., Genome sequence of the Enterobacter mori type strain, LMG 25706, a pathogenic bacterium of Morus alba L.
Prevalence of fosfomycin resistance among CTX-M-producing Escherichia coli clinical isolates in Japan and identification of novel plasmid-mediated fosfomycin-modifying enzymes.
Prevalence of fosfomycin resistance among CTX-M-producing Escherichia coli clinical isolates in Japan and identification of novel plasmid-mediated fosfomycin-modifying enzymes.
The study identified two novel plasmid-mediated fosfomycin-modifying enzymes, FosA3 and FosC2, which inactivate fosfomycin through glutathione S-transferase activity.
Identification of a novel fosfomycin resistance gene (fosA2) in Enterobacter cloacae from the Salmon River, Canada.
Identification of a novel fosfomycin resistance gene (fosA2) in Enterobacter cloacae from the Salmon River, Canada.
Identification of a novel fosfomycin resistance gene (fosA2) in Enterobacter cloacae from the Salmon River, Canada.
Identification of a novel fosfomycin resistance gene (fosA2) in Enterobacter cloacae from the Salmon River, Canada.
Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain.
The study identifies multiple antibiotic resistance genes in the NDM-1-encoding Klebsiella pneumoniae strain, including eight beta-lactamase genes and various other resistance determinants, highlighting the complexity of its resistance profile.
Practical agar-based disk potentiation test for detection of fosfomycin-nonsusceptible Escherichia coli clinical isolates producing glutathione S-transferases.
The study developed a disk potentiation test to detect fosfomycin-nonsusceptible E. coli isolates producing glutathione S-transferases (FR-GSTs), specifically fosA3 and fosA4. The test involves the use of sodium phosphonoformate (PPF) to enhance the growth inhibition zone around fosfomycin disks, allowing reliable identification of FR-GST producers.
Practical agar-based disk potentiation test for detection of fosfomycin-nonsusceptible Escherichia coli clinical isolates producing glutathione S-transferases.
Practical agar-based disk potentiation test for detection of fosfomycin-nonsusceptible Escherichia coli clinical isolates producing glutathione S-transferases.
Practical agar-based disk potentiation test for detection of fosfomycin-nonsusceptible Escherichia coli clinical isolates producing glutathione S-transferases.
Practical agar-based disk potentiation test for detection of fosfomycin-nonsusceptible Escherichia coli clinical isolates producing glutathione S-transferases.
Practical agar-based disk potentiation test for detection of fosfomycin-nonsusceptible Escherichia coli clinical isolates producing glutathione S-transferases.
The study developed a disk potentiation test to detect fosfomycin-nonsusceptible E. coli isolates producing glutathione S-transferases (FR-GSTs), specifically fosA3 and fosA4. The test involves the use of sodium phosphonoformate (PPF) to enhance the growth inhibition zone around fosfomycin disks, allowing reliable identification of FR-GST producers.
First report of a clinical, multidrug-resistant Enterobacteriaceae isolate coharboring fosfomycin resistance gene fosA3 and carbapenemase gene blaKPC-2 on the same transposon, Tn1721.
The study reports the first occurrence of the fosfomycin resistance gene fosA3 and the carbapenemase gene blaKPC-2 coexisting on the same transposon, Tn1721, within a conjugative IncP plasmid in clinical Enterobacteriaceae isolates.
Characterization of fosA5, a new plasmid-mediated fosfomycin resistance gene in Escherichia coli.
Characterization of fosA5, a new plasmid-mediated fosfomycin resistance gene in Escherichia coli.
Characterization of fosA5, a new plasmid-mediated fosfomycin resistance gene in Escherichia coli.
Antimicrobial Resistance Mechanisms in Salmonella and Other Bacteria
The paper discusses multidrug efflux pumps from various bacterial food pathogens including Enterobacteriaceae, Vibrio cholerae, and Staphylococcus aureus, highlighting their role in multidrug resistance.
Characterization of Fosfomycin Resistant Extended-Spectrum β-Lactamase-Producing Escherichia coli Isolates from Human and Pig in Taiwan.
The study identified fosA3 as a fosfomycin resistance gene in ESBL-producing E. coli isolates from humans and pigs in Taiwan. Additionally, mutations in murA, glpT, and uhpT were found to contribute to fosfomycin resistance.
Draft genome sequence of blaVeb-1, blaoxa-10 producing multi-drug resistant (MDR) Pseudomonas aeruginosa strain VRFPA09 recovered from bloodstream infection.
The study reports the draft genome sequence of MDR Pseudomonas aeruginosa strain VRFPA09, identifying several AMR genes including blaVeb-1, blaOXA-10, aadA1, aph(3')Iib, Sul1, CatB7, TetG, dfrB5, and fosA, which contribute to resistance against various antibiotics.
Fosfomycin Resistance in Escherichia coli, Pennsylvania, USA.
The study identifies the fosA3 gene as the cause of high-level fosfomycin resistance in an E. coli strain from Pennsylvania, USA, and characterizes the plasmid carrying this gene.
Fosfomycin Resistance in Escherichia coli, Pennsylvania, USA.
Fosfomycin Resistance in Escherichia coli, Pennsylvania, USA.
Fosfomycin Resistance in Escherichia coli, Pennsylvania, USA.
Complete Sequence of a Novel IncR-F33:A–:B– Plasmid, pKP1034, Harboring fosA3, blaKPC-2, blaCTX-M-65, blaSHV-12, and rmtB from an Epidemic Klebsiella pneumoniae Sequence Type 11 Strain in China.
The study identifies a novel plasmid pKP1034 carrying multiple resistance genes including fosA3, blaKPC-2, blaCTX-M-65, blaSHV-12, and rmtB in a Klebsiella pneumoniae ST11 strain, highlighting the complex resistance mechanisms and potential for horizontal gene transfer.
Treatment options for infections caused by carbapenem-resistant Enterobacteriaceae: can we apply "precision medicine" to antimicrobial chemotherapy?
The paper discusses the mechanisms of resistance in carbapenem-resistant Enterobacteriaceae (CRE), focusing on beta-lactamases such as KPC, NDM, and OXA-48, as well as regulatory genes and efflux pumps contributing to polymyxin and tigecycline resistance.
Co-spread of metal and antibiotic resistance within ST3-IncHI2 plasmids from E. coli isolates of food-producing animals.
The study identifies multiple antibiotic resistance genes, including oqxAB, bla CTX-M, aac(6')-Ib-cr, floR, qnrS1, rmtB, fosA3, pcoA, and silE, on ST3-IncHI2 plasmids from E. coli isolates of food-producing animals, highlighting the co-spreading of metal and antibiotic resistance.
Glutathione-S-transferase FosA6 of Klebsiella pneumoniae origin conferring fosfomycin resistance in ESBL-producing Escherichia coli.
Glutathione-S-transferase FosA6 of Klebsiella pneumoniae origin conferring fosfomycin resistance in ESBL-producing Escherichia coli.
Glutathione-S-transferase FosA6 of Klebsiella pneumoniae origin conferring fosfomycin resistance in ESBL-producing Escherichia coli.
Glutathione-S-transferase FosA6 of Klebsiella pneumoniae origin conferring fosfomycin resistance in ESBL-producing Escherichia coli.
The study identifies fosA6, a plasmid-mediated glutathione-S-transferase from Klebsiella pneumoniae that confers high-level fosfomycin resistance in ESBL-producing Escherichia coli. FosA6 functions as a GST and inactivates fosfomycin efficiently.
SSTAR, a Stand-Alone Easy-To-Use Antimicrobial Resistance Gene Predictor.
The study presents SSTAR, a software tool for identifying antimicrobial resistance (AR) genes from whole-genome sequencing data. It detects known AR genes and potential new variants, including truncated forms. The tool was applied to analyze resistance genes in Klebsiella pneumoniae ST437 and Escherichia coli ST44, revealing various beta-lactamases, aminoglycoside resistance genes, and porin mutations contributing to resistance.
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing.
The study presents a real-time analysis framework for MinION sequencing data, demonstrating the ability to identify pathogens and antibiotic resistance genes within a few hours of sequencing. Key resistance genes identified include blaSHV, mphA, strA, strB, blaTEM, sul2, blaOXA, aac3, aac6, blaCMY, blaCFE, blaLAT, blaBIL, QnrB, aadA, oqxA, tetA, oqxB, rmtC, sul1, sul3, fosA, blaNDM, oqxA, blaSHV, oqxB, aadB, sul1, sul3, blaOXA, blaOKP, fosA, blaSHV, blaOKP, blaLEN, oqxA, and oqxB.
Whole-Genome Analysis of Antimicrobial-Resistant and Extraintestinal Pathogenic Escherichia coli in River Water.
The study identified numerous antimicrobial resistance genes in Escherichia coli isolates from river water, highlighting the presence of multidrug-resistant and extraintestinal pathogenic strains. Key resistance genes included blaTEM-1, aac(3)-IId, qnrB7, and others.
Fosfomycin: Mechanism and Resistance.
The paper discusses the mechanisms of fosfomycin resistance, including the identification of fosfomycin-modifying enzymes such as FosA, FosB, FosX, and FosA3, which inactivate fosfomycin and contribute to resistance in various bacterial species.
Fosfomycin: Mechanism and Resistance.
The paper discusses the mechanisms of fosfomycin resistance, including the identification of fosfomycin-modifying enzymes such as FosA, FosB, FosX, and FosA3, which inactivate fosfomycin and contribute to resistance in various bacterial species.
Nationwide Surveillance of Clinical Carbapenem-resistant Enterobacteriaceae (CRE) Strains in China.
The study identified blaKPC-2 and blaNDM as the primary carbapenemase genes responsible for carbapenem resistance in CRE in China, with blaKPC-2 being more prevalent in K. pneumoniae and blaNDM in E. coli. Additionally, fosA3 was found to mediate fosfomycin resistance, and mcr-1 was associated with colistin resistance in some E. coli strains.
Emergence of Plasmid-Mediated Fosfomycin-Resistance Genes among Escherichia coli Isolates, France.
The study identified the emergence of plasmid-mediated fosfomycin-resistance genes, particularly fosA3 and fosA5, in Escherichia coli isolates in France, highlighting their association with extended-spectrum β-lactamase (ESBL) producers and potential implications for treatment failure.
Emergence of Plasmid-Mediated Fosfomycin-Resistance Genes among Escherichia coli Isolates, France.
The study identified the emergence of plasmid-mediated fosfomycin-resistance genes, particularly fosA3 and fosA5, in Escherichia coli isolates in France, highlighting their association with extended-spectrum β-lactamase (ESBL) producers and potential implications for treatment failure.
Emergence of Plasmid-Mediated Fosfomycin-Resistance Genes among Escherichia coli Isolates, France.
The study identified the emergence of plasmid-mediated fosfomycin-resistance genes, particularly fosA3 and fosA5, in Escherichia coli isolates in France, highlighting their association with extended-spectrum β-lactamase (ESBL) producers and potential implications for treatment failure.
Widespread Fosfomycin Resistance in Gram-Negative Bacteria Attributable to the Chromosomal fosA Gene.
The study identifies the widespread presence of the chromosomal fosA gene in various Gram-negative bacteria, which confers high-level fosfomycin resistance. The gene was shown to be responsible for fosfomycin resistance when expressed in E. coli and its deletion in S. marcescens eliminated resistance.
Pseudomonas Endocarditis with an unstable phenotype: the challenges of isolate characterization and Carbapenem stewardship with a partial review of the literature.
The study identified several AMR genes in Pseudomonas aeruginosa isolates, including blaADC35, aph(3')-II, blaOXA-50, catB7, and fosA, which conferred resistance to various antibiotics. The isolates showed varying resistance profiles, highlighting the complexity of AMR mechanisms in P. aeruginosa.
Structure and Dynamics of FosA-Mediated Fosfomycin Resistance in Klebsiella pneumoniae and Escherichia coli.
FosA3 and FosA_KP confer greater fosfomycin resistance than FosA_PA, primarily due to differences in their dimer interface loops and catalytic efficiency.
Structure and Dynamics of FosA-Mediated Fosfomycin Resistance in Klebsiella pneumoniae and Escherichia coli.
FosA3 and FosA_KP confer greater fosfomycin resistance than FosA_PA, primarily due to differences in their dimer interface loops and catalytic efficiency.
Structure and Dynamics of FosA-Mediated Fosfomycin Resistance in Klebsiella pneumoniae and Escherichia coli.
FosA3 and FosA_KP confer greater fosfomycin resistance than FosA_PA, primarily due to differences in their dimer interface loops and catalytic efficiency.
Inhibition of Fosfomycin Resistance Protein FosA by Phosphonoformate (Foscarnet) in Multidrug-Resistant Gram-Negative Pathogens.
PPF inhibits FosA activity across Gram-negative species and can potentiate fosfomycin activity against the majority of strains with chromosomally encoded fosA.
Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates.
The study demonstrates the feasibility of rapid nanopore sequencing for detecting plasmid-borne antimicrobial resistance (AMR) genes in clinical isolates. It identifies several AMR genes, including beta-lactamases, aminoglycoside-modifying enzymes, sulfonamide resistance genes, tetracycline resistance genes, macrolide resistance genes, and phenicol resistance genes, in both Escherichia coli and Klebsiella pneumoniae isolates.
Origin of the plasmid-mediated fosfomycin resistance gene fosA3.
The study identifies fosA3 as a plasmid-mediated fosfomycin resistance gene originating from the chromosome of Kluyvera georgiana. The gene was shown to confer high-level fosfomycin resistance when cloned in E. coli.
Exploring the Genome and Phenotype of Multi-Drug Resistant Klebsiella pneumoniae of Clinical Origin.
The study identified multiple antimicrobial resistance genes in 11 multidrug-resistant Klebsiella pneumoniae isolates, including ESBL genes (blaCTX-M-15, blaSHV-12, blaTEM-1B), fluoroquinolone resistance genes (oqxAB, qnrB), and others such as catA, catB, tet, sul, dfr, and fosA. These genes contribute to resistance against various antibiotics, highlighting the complex resistance profile of these isolates.
Rapid in situ imaging and whole genome sequencing of biofilm in neonatal feeding tubes: A clinical proof of concept.
The study identified several AMR genes in Enterococcus faecalis and Enterobacter hormaechei isolated from neonatal feeding tubes, including lsaA (macrolide resistance), tetM (tetracycline resistance), blaACT-15 (beta-lactam resistance), and fosA (fosfomycin resistance).
High Prevalence of CTX-M-15-Type ESBL-Producing E. coli from Migratory Avian Species in Pakistan.
The study identified a high prevalence of CTX-M-15-type ESBL-producing E. coli in migratory avian species in Pakistan, highlighting the role of wild birds as reservoirs of multidrug-resistant bacteria and the potential for horizontal gene transfer of resistance determinants.
Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon.
The study identified multiple antibiotic resistance genes in ESBL-producing K. pneumoniae isolates from pigs and abattoir workers in Cameroon, including bla CTX-M-15, bla TEM-1B, bla SHV-28, and others, highlighting the presence of multidrug-resistant strains and their potential for zoonotic transmission.
Pharmacokinetics and Pharmacodynamics of Fosfomycin and Its Activity against Extended-Spectrum-β-Lactamase-, Plasmid-Mediated AmpC-, and Carbapenemase-Producing Escherichia coli in a Murine Urinary Tract Infection Model.
The study identified the fosA gene as a determinant of fosfomycin resistance in E. coli, demonstrating its role in conferring resistance through experimental validation.
Genomic Analysis of a Pan-Resistant Isolate of Klebsiella pneumoniae, United States 2016.
The study reports a pan-resistant Klebsiella pneumoniae isolate with resistance to all 26 antibiotics tested, including multiple beta-lactamases, aminoglycoside modifying enzymes, sulfonamide resistance, and colistin resistance due to mgrB inactivation.
The Genomic Basis of Intrinsic and Acquired Antibiotic Resistance in the Genus Serratia.
The study identified 123 distinct antibiotic resistance genes (ARGs) in the genus Serratia, including intrinsic and acquired resistance genes, as well as efflux pump-related genes. Key findings include the detection of various beta-lactamases, aminoglycoside resistance genes, quinolone resistance genes, and efflux pumps. Notably, the study highlights the presence of plasmid-borne ARGs in nosocomial strains and the role of efflux pumps in multidrug resistance.
Case Report of an Extensively Drug-Resistant Klebsiella pneumoniae Infection With Genomic Characterization of the Strain and Review of Similar Cases in the United States.
The study identifies multiple AMR genes and mutations in an XDR-KP strain, including blaKPC-3, blaOXA-9, blaTEM-1A, and various resistance mechanisms involving efflux pumps, porin deficiencies, and fluoroquinolone resistance mutations.
Characterization of a novel multidrug resistance plasmid pSGB23 isolated from Salmonella enterica subspecies enterica serovar Saintpaul.
The study characterizes a novel multidrug resistance plasmid pSGB23 isolated from Salmonella enterica subspecies enterica serovar Saintpaul, carrying 11 antibiotic resistance genes responsible for resistance to 9 classes of antibiotics and quaternary ammonium compounds.
Antimicrobial Resistance in Escherichia coli.
The paper discusses the characterization of various antimicrobial resistance genes in Escherichia coli, including extended-spectrum beta-lactamases (ESBLs), AmpC cephalosporinases, carbapenemases, plasmid-mediated quinolone resistance (PMQR) genes, aminoglycoside-modifying enzymes, fosfomycin resistance genes, and tetracycline resistance genes. These genes confer resistance to multiple classes of antibiotics, highlighting the complex nature of antimicrobial resistance in E. coli.
Multiple mutations in lipid-A modification pathway & novel fosA variants in colistin-resistant Klebsiella pneumoniae.
The study identifies novel and rare mutations in the arnT and eptA genes involved in lipid A modification pathways, along with novel fosA variants, contributing to colistin resistance in Klebsiella pneumoniae.
Multiple mutations in lipid-A modification pathway & novel fosA variants in colistin-resistant Klebsiella pneumoniae.
The study identifies novel and rare mutations in the arnT and eptA genes involved in lipid A modification pathways, along with novel fosA variants, contributing to colistin resistance in Klebsiella pneumoniae.
Multiple mutations in lipid-A modification pathway & novel fosA variants in colistin-resistant Klebsiella pneumoniae.
The study identifies novel and rare mutations in the arnT and eptA genes involved in lipid A modification pathways, along with novel fosA variants, contributing to colistin resistance in Klebsiella pneumoniae.
A Fatal Bacteremia Caused by Hypermucousviscous KPC-2 Producing Extensively Drug-Resistant K64-ST11 Klebsiella pneumoniae in Brazil.
The study reports a fatal case of bacteremia caused by a hypermucoviscous KPC-2 producing extensively drug-resistant K64-ST11 Klebsiella pneumoniae. The isolate harbored multiple AMR genes including blaKPC-2, blaSHV-11, qnrS1, oqxA, oqxB, sul1, sul2, dfrA1, tetA, tetD, and fosA, contributing to its extensive drug resistance.
Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites.
The study identified several AMR genes in Pseudomonas aeruginosa strains from different geographic locations, including beta-lactamases, aminoglycoside resistance genes, fosfomycin resistance, chloramphenicol resistance, sulfonamide resistance, quaternary ammonium compound resistance, tetracycline resistance, and others. Indian eye isolates exhibited a higher diversity of resistance genes compared to Australian isolates.
Draft genome sequence data of a tigecycline-resistant Enterobacter cloacae ST93 clinical strain isolated from bloodstream infection.
The study reports the draft genome sequence of a tigecycline-resistant Enterobacter cloacae ST93 clinical isolate, TREC1, which harbors multiple antimicrobial resistance genes, including those encoding resistance to beta-lactams, aminoglycosides, fluoroquinolones, fosfomycin, macrolides, lincosamides, streptogramin B, phenicols, sulfonamides, trimethoprim, and tetracyclines. The isolate is resistant to all antibiotics tested except colistin.
Rapid Detection of Fosfomycin Resistance in Escherichia coli.
The study developed a rapid test for detecting fosfomycin resistance in E. coli, identifying fosA3 as a key gene responsible for acquired fosfomycin resistance.
Small-Molecule Inhibitor of FosA Expands Fosfomycin Activity to Multidrug-Resistant Gram-Negative Pathogens.
The study identifies ANY1, a small-molecule inhibitor of FosA, which enhances fosfomycin activity against multidrug-resistant Gram-negative pathogens by inhibiting FosA-mediated fosfomycin metabolism.
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.
The study identified multiple ESBL genes, including bla CTX-M-15, several bla SHV, bla TEM-63, and bla OXA-10, along with other AMR genes across diverse lineages of K. pneumoniae isolates from Malawi. No carbapenem resistance genes were detected, but plasmids similar to carbapenem resistance-associated plasmid pNDM-mar were found.
Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal, South Africa.
The study characterized multiple AMR genes in ESBL-producing K. pneumoniae isolates, including bla TEM-1B, bla CTX-M-15, bla SHV-1, bla OXA-1, aad AI6, aac (6′)Ib-cr, aph (6)Id, aph (3′)-Ib, oqx A, oqx B, fos A, ARR-3, sul 1, sul 2, dfr A14, dfr A27, cat A1, and cat B4.
Diversity, Virulence, and Antimicrobial Resistance in Isolates From the Newly Emerging Klebsiella pneumoniae ST101 Lineage.
The study characterizes the antimicrobial resistance genes and mutations in the emerging Klebsiella pneumoniae ST101 lineage, highlighting the presence of multiple resistance mechanisms including carbapenemases, extended-spectrum beta-lactamases, and various other resistance genes.
Identification of a Carbapenemase-Producing Hypervirulent Klebsiella pneumoniae Isolate in the United States.
The study identifies a carbapenemase-producing hypervirulent Klebsiella pneumoniae isolate (CP-hvKP) in the United States, which carries the blaKPC-2 gene on a plasmid, along with other resistance genes such as blaSHV-36, fosA, oqxA, and oqxB. The isolate also possesses hypervirulence factors, highlighting the dual threat of antimicrobial resistance and virulence.
Epidemiology and molecular characterization of the antimicrobial resistance of Pseudomonas aeruginosa in Chinese mink infected by hemorrhagic pneumonia.
The study identified fosA and glpt genes associated with fosfomycin resistance in Pseudomonas aeruginosa isolates from Chinese mink, as well as mutations in gyrA and parC contributing to fluoroquinolone resistance.
Diverse Commensal Escherichia coli Clones and Plasmids Disseminate Antimicrobial Resistance Genes in Domestic Animals and Children in a Semirural Community in Ecuador.
The study identified various antimicrobial resistance (AMR) genes in commensal Escherichia coli isolates from children and domestic animals in a semirural community in Ecuador. These genes included blaTEM-1B, dfrA8, qnrB19, strA, strB, tetA, tetB, sul1, sul2, and others, contributing to resistance against multiple antibiotics such as ampicillin, trimethoprim, tetracycline, and sulfamethoxazole. The research highlights the role of plasmids in disseminating these AMR genes and emphasizes the complexity of AMR transmission in such environments.
Evaluation of the Synergy of Ceftazidime-Avibactam in Combination with Meropenem, Amikacin, Aztreonam, Colistin, or Fosfomycin against Well-Characterized Multidrug-Resistant Klebsiella pneumoniae and Pseudomonas aeruginosa.
The study evaluated the synergy of ceftazidime-avibactam (CZA) in combination with other antibiotics against multidrug-resistant Klebsiella pneumoniae and Pseudomonas aeruginosa. Several AMR genes, including blaKPC-2, blaKPC-3, blaCTX-M-15, and others, were identified as conferring resistance to CZA and other antibiotics.
Commonality of Multidrug-Resistant Klebsiella pneumoniae ST348 Isolates in Horses and Humans in Portugal.
Molecular Epidemiology of Multidrug-Resistant Klebsiella pneumoniae Isolates in a Brazilian Tertiary Hospital.
The study identified various AMR genes and mutations in multidrug-resistant Klebsiella pneumoniae isolates, including bla KPC, bla CTX-M, bla TEM, and mutations in ompk35, ompk36, gyrA, and parC. These findings highlight the complex resistance mechanisms contributing to the persistence of MDR-Kp in the hospital setting.
Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years.
The study identifies various AMR genes in ST258 K. pneumoniae isolates, including blaKPC-2, blaKPC-3, aadA2, aadA1, blaTEM-1A, blaSHV-11, blaSHV-12, oqxA, oqxB, fosA, dfrA12, dfrA14, sul1, sul2, catA1, cml, and strAB, which confer resistance to multiple antibiotics.
Characterization of a Multidrug-Resistant Porcine Klebsiella pneumoniae Sequence Type 11 Strain Coharboring bla(KPC-2) and fosA3 on Two Novel Hybrid Plasmids.
The study identifies the presence of blaKPC-2 and fosA3 on two novel hybrid plasmids in a multidrug-resistant porcine Klebsiella pneumoniae ST11 strain, highlighting the potential for transmission between animals and humans.
In vivo acquisition of fosfomycin resistance in Escherichia coli by fosA transmission from commensal flora.
The study reports the in vivo transmission of the fosA9 gene from Klebsiella variicola to Escherichia coli, resulting in fosfomycin resistance.
Characterization of a Carbapenem-Resistant Kluyvera Cryocrescens Isolate Carrying Bla(ndm-1) from Hospital Sewage.
The study characterizes a carbapenem-resistant Kluyvera cryocrescens isolate carrying blaNDM-1 on a self-transmissible IncX3 plasmid, along with other resistance genes such as blaSHV-12, blaCTX-M-3, qnrS1, sul1, fosA, dfrA21, and dfrA14.
Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces.
The study identified various AMR genes, including bla OXA-23, bla OXA-66, bla NDM-1, bla NDM-5, bla NDM-7, bla OXA-181, bla OXA-232, erm(B), vanA, msr(C), fosA, oqxA, aph(3')-lb, bla PAO, bla OXA-50, catB7, and bla GES-5, in multidrug-resistant bacteria isolated from ICU surfaces in Pakistan and the USA.
Inter-host Transmission of Carbapenemase-Producing Escherichia coli among Humans and Backyard Animals.
The study identified blaNDM genes as the primary cause of carbapenem resistance in Escherichia coli isolates from humans, pigs, chickens, and flies in rural China, highlighting the transmission of these resistance genes between humans and backyard animals.
Molecular characterization of carbapenem-resistant Klebsiella pneumoniae isolates with focus on antimicrobial resistance.
The study identifies blaKPC-2 as the dominant carbapenemase gene in clinical CRKP isolates, along with various ESBLs and other resistance genes such as blaCTX-M, blaTEM, blaSHV, aac(3)-IId, rmtB, QnrS1, oqxA, oqxB, fosA, catA1, catA2, dfrA1, and dfrA17.
Genomic characterization of an emerging bla(KPC-2) carrying Enterobacteriaceae clinical isolates in Thailand.
The study describes the first characterization of blaKPC-2 carrying Klebsiella pneumoniae, Escherichia coli, and Enterobacter asburiae isolates in Thailand, highlighting their resistance to carbapenems and other antibiotics.
Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.
The study demonstrates the capability of MinION sequencing combined with NanoOK RT software to rapidly identify pathogens and their antimicrobial resistance gene profiles in preterm infants, enabling real-time diagnostics and resistance profiling.
Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.
The study demonstrates the capability of MinION sequencing combined with NanoOK RT software to rapidly identify pathogens and their antimicrobial resistance gene profiles in preterm infants, enabling real-time diagnostics and resistance profiling.
Multidrug-Resistant and Clinically Relevant Gram-Negative Bacteria Are Present in German Surface Waters.
The study identifies several AMR genes in multidrug-resistant Gram-negative bacteria isolated from German surface waters, highlighting the presence of clinically relevant resistance mechanisms such as bla CTX-M-1, bla CTX-M-15, mcr-1, and others.
Dissemination and Comparison of Genetic Determinants of mcr-Mediated Colistin Resistance in Enterobacteriaceae via Retailed Raw Meat Products.
The study identified the mcr-1 gene as a major determinant of colistin resistance in Enterobacteriaceae from retail meat, with the fosA3 gene contributing to fosfomycin resistance in a multidrug-resistant E. coli isolate from China.
In Vitro Pharmacodynamic Analyses Help Guide the Treatment of Multidrug-Resistant Enterococcus faecium and Carbapenem-Resistant Enterobacter cloacae Bacteremia in a Liver Transplant Patient.
The study identifies various AMR genes and mutations in Enterococcus faecium and Enterobacter hormaechei isolates from a liver transplant patient, highlighting their roles in resistance to multiple antibiotics.
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing.
The study identified multiple AMR genes in extensively drug-resistant Klebsiella pneumoniae isolates, including beta-lactamases (blaSHV-11, blaTEM-1B, blaVEB-1, blaOXA-10, blaKPC-2, blaOXA-9, blaVIM-27, blaCTX-M-15, blaOXA-1, blaOXA-48), aminoglycoside resistance genes (aadA1, ant(2'')-Ia, aph(6)-Id, arr-2, aadA24, aph(3')-Ia, aph(6)-Id, aac(3)-IIa, aac(6')Ib-cr, aac(6')-Ib, aac(6')-Ib-cr), sulfonamide resistance genes (sul1, sul2), tetracycline resistance genes (tet(A), tet(G)), trimethoprim resistance genes (dfrA1, dfrA14, dfrA23), chloramphenicol resistance genes (cmlA1, catB4), and others.
Carbapenem-Resistant Enterobacter hormaechei ST1103 with IMP-26 Carbapenemase and ESBL Gene bla (SHV-178).
The study identifies a multidrug-resistant Enterobacter hormaechei strain L51 carrying the bla IMP-26 carbapenemase gene and bla SHV-178 ESBL gene, along with other resistance genes on a conjugative IncHI2/2A plasmid.
Isolation of an antimicrobial-resistant, biofilm-forming, Klebsiella grimontii isolate from a reusable water bottle.
The study identifies the antimicrobial-resistant Klebsiella grimontii isolate SS141, which exhibits resistance to ampicillin, amoxicillin, and fosfomycin due to the presence of the bla OXY-6-4 and a variant of fosA genes. Additionally, the isolate shows biofilm-forming capabilities on various plastic surfaces.
Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology.
The study identified several AMR genes in Gram-negative bacteria isolated from LTCF residents, including bla CTX-M-27, bla CTX-M-14, bla TEM-1B, bla IMP-1, and others, which confer resistance to various antibiotics such as β-lactams, aminoglycosides, and fluoroquinolones.
Fosfomycin Resistance in Escherichia coli Isolates from South Korea and in vitro Activity of Fosfomycin Alone and in Combination with Other Antibiotics.
The study identified fosfomycin resistance mechanisms in E. coli isolates from South Korea, including the presence of the fosA3 gene and mutations in glpT, uhpT, and murA. Fosfomycin resistance was found in 6.7% of isolates, with higher rates in LTCF-onset isolates.
Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms.
The study identifies several antibiotic resistance genes, including bla CTX-M, fosA3, bla TEM, qnrS, and tet(X), which were enriched in the gut resistome of students exposed to swine farm environments. These genes conferred resistance to various antibiotics such as cephalosporins, fosfomycin, penicillins, fluoroquinolones, and tetracyclines.
Characterization of an IMP-4-Producing Klebsiella pneumoniae ST1873 Strain Recovered from an Infant with a Bloodstream Infection in China.
The study characterizes an IMP-4-producing Klebsiella pneumoniae ST1873 strain, identifying multiple antimicrobial resistance genes including blaIMP-4, blaSHV-2, blaSHV-11, oqxA, oqxB, aph(6)-Id, strA, catA1, dfrA5, sul2, and fosA.
Rapid Emergence of a Pandrug-Resistant Klebsiella pneumoniae ST11 Isolate in an Inpatient in a Teaching Hospital in China After Treatment with Multiple Broad-Spectrum Antibiotics.
The study identifies seven resistance genes in the pandrug-resistant K. pneumoniae ST11 strain KP65, including bla KPC-2, bla CTX-M-65, rmtB, fosA, and fosA3, along with chromosomal mutations in mgrB and rpsJ that contribute to colistin and tigecycline resistance.
Rapid Emergence of a Pandrug-Resistant Klebsiella pneumoniae ST11 Isolate in an Inpatient in a Teaching Hospital in China After Treatment with Multiple Broad-Spectrum Antibiotics.
The study identifies seven resistance genes in the pandrug-resistant K. pneumoniae ST11 strain KP65, including bla KPC-2, bla CTX-M-65, rmtB, fosA, and fosA3, along with chromosomal mutations in mgrB and rpsJ that contribute to colistin and tigecycline resistance.
International clones of extended-spectrum β-lactamase (CTX-M)-producing Escherichia coli in peri-urban wild animals, Brazil.
The study identified various AMR genes in CTX-M-producing E. coli isolates from peri-urban wild animals in Brazil, including bla CTX-M-55, bla CTX-M-2, bla CTX-M-15, bla CTX-M-14, and others, indicating the presence of multidrug-resistant bacteria in wildlife.
Emergence of a multidrug-resistant ST 27 Escherichia coli co-harboring bla(NDM-1), mcr-1, and fosA3 from a patient in China.
The study identifies a multidrug-resistant ST 27 Escherichia coli isolate co-harboring bla(NDM-1), mcr-1, and fosA3, highlighting the emergence of resistance to carbapenems, colistin, and fosfomycin.
Comparative Genomic Analysis Provides Insights into the Phylogeny, Resistome, Virulome, and Host Adaptation in the Genus Ewingella.
The study identified 27 unique antibiotic resistance genes in Ewingella americana, including fosA, which confers resistance to fosfomycin. The strain B6-1 exhibited resistance to several antibiotics, including ampicillin, cefazolin, clindamycin, novobiocin, rifampicin, tetracycline, and vancomycin.
Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors.
The study identified various AMR genes and mutations in Klebsiella pneumoniae isolates from pregnant women in low-income countries, highlighting the prevalence of multidrug-resistant strains and the role of environmental factors in their carriage.
A broad-spectrum antibiotic adjuvant reverses multidrug-resistant Gram-negative pathogens.
The study identifies several AMR genes, including blaNDM-5, mcr-1, tetA, mdfA, oqxAB, arr-2, aph(4), aac(3)-IV, and fosA3, which are associated with resistance to various antibiotics. These genes were found in a multidrug-resistant E. coli isolate and were shown to be targeted by the antibiotic adjuvant SLAP-S25, enhancing the efficacy of antibiotics against MDR Gram-negative pathogens.
Identification of fosA10, a Novel Plasmid-Mediated Fosfomycin Resistance Gene of Klebsiella pneumoniae Origin, in Escherichia coli.
The study identifies fosA10, a novel plasmid-mediated fosfomycin resistance gene originating from Klebsiella pneumoniae, which was transferred to E. coli via IS10. fosA10 conferred high-level fosfomycin resistance when cloned into E. coli.
Metagenomic Diagnosis for a Culture-Negative Sample From a Patient With Severe Pneumonia by Nanopore and Next-Generation Sequencing.
The study identified several AMR genes in a culture-negative sample from a patient with severe pneumonia, including bla SHV-12, bla KPC-2, bla TEM-1, bla CTX-M-65, aac(3)-IIa, aadA1, dfrA1, sul1, aph(3')-Ia, catA1, fosA, acrA, and rmtB, which confer resistance to various antibiotics.
Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors.
The study identified various antimicrobial resistance genes in Klebsiella isolates from preterm infants, highlighting the presence of multidrug resistance mechanisms.
Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors.
The study identified various antimicrobial resistance genes in Klebsiella isolates from preterm infants, highlighting the presence of multidrug resistance mechanisms.
Cointegration as a mechanism for the evolution of a KPC-producing multidrug resistance plasmid in Proteus mirabilis.
The study characterizes two carbapenemase-producing plasmids, pT18 and pT211, from Proteus mirabilis, highlighting the role of cointegrate plasmids in the dissemination of antibiotic resistance genes. The plasmids carry various resistance genes, including blaKPC-2, blaCTX-M-65, blaTEM-1B, rmtB, and fosA3, contributing to multidrug resistance.
First detection of autochthonous extensively drug-resistant NDM-1 Pseudomonas aeruginosa ST235 from a patient with bloodstream infection in Italy, October 2019.
The study reports the first autochthonous extensively drug-resistant NDM-1 Pseudomonas aeruginosa ST235 strain in Italy, highlighting the presence of multiple beta-lactamase genes, aminoglycoside modifying enzymes, and multidrug efflux pumps contributing to its extensive drug resistance.
First detection of autochthonous extensively drug-resistant NDM-1 Pseudomonas aeruginosa ST235 from a patient with bloodstream infection in Italy, October 2019.
The study reports the first autochthonous extensively drug-resistant NDM-1 Pseudomonas aeruginosa ST235 strain in Italy, highlighting the presence of multiple beta-lactamase genes, aminoglycoside modifying enzymes, and multidrug efflux pumps contributing to its extensive drug resistance.
Virulence Potential of a Multidrug-Resistant Escherichia coli Strain Belonging to the Emerging Clonal Group ST101-B1 Isolated from Bloodstream Infection.
The study identified a multidrug-resistant E. coli strain EC121 harboring 14 antimicrobial resistance genes, including bla CTX-M-2, which confers resistance to multiple beta-lactam antibiotics.
Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data.
The study presents machine learning models for predicting antimicrobial resistance in Gram-negative bacteria using whole-genome sequencing data. Key resistance genes identified include AAC(6')-Ib, APH(3")-Ib, OqxB21, FosA2, SHV-200, EC-18, CTX-M-222, KPC-33, OXA-51, and OXA-561.
In Vitro Pharmacodynamics of Fosfomycin against Carbapenem-Resistant Enterobacter cloacae and Klebsiella aerogenes.
The study identified the fosA gene as a determinant of fosfomycin resistance in carbapenem-resistant Enterobacter cloacae and Klebsiella aerogenes. Five out of eight isolates carried the fosA gene, while none harbored the recently discovered fosL-like gene.
IMP-38-Producing High-Risk Sequence Type 307 Klebsiella pneumoniae Strains from a Neonatal Unit in China.
The study identifies IMP-38-producing high-risk ST307 Klebsiella pneumoniae strains in a neonatal unit in China, highlighting the acquisition of diverse antimicrobial resistance genes, including blaIMP-38, blaCTX-M-3, blaSHV-2A, blaSHV-28, blaTEM-1, aacA4, catB3, oqxA, oqxB, and fosA6.
Multiple Plasmid Vectors Mediate the Spread of fosA3 in Extended-Spectrum-β-Lactamase-Producing Enterobacterales Isolates from Retail Vegetables in China.
The study identifies fosA3 as a plasmid-mediated fosfomycin resistance gene in ESBL-producing Enterobacterales isolates from retail vegetables in China, highlighting the role of multiple plasmid vectors in its spread.
Emerging Antimicrobial-Resistant High-Risk Klebsiella pneumoniae Clones ST307 and ST147.
The study identifies and characterizes the antimicrobial resistance genes and mutations associated with the high-risk Klebsiella pneumoniae clones ST307 and ST147, highlighting their global spread and the diversity of resistance mechanisms they employ.
Occurrence and Antimicrobial Resistance Traits of Escherichia coli from Wild Birds and Rodents in Singapore.
Identification of a Cluster of Extended-spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Sequence Type 101 Isolated From Food and Humans.
The study identifies a cluster of extended-spectrum beta-lactamase (ESBL)-producing Klebsiella pneumoniae sequence type 101 isolated from food and humans, highlighting the potential role of food as a source of multidrug-resistant bacteria transmission to humans.
Characterization of Fosfomycin and Nitrofurantoin Resistance Mechanisms in Escherichia coli Isolated in Clinical Urine Samples.
The study identifies fosA3 as a novel plasmid-mediated fosfomycin resistance gene in E. coli isolates in Spain. Fosfomycin resistance is primarily due to defects in the UhpT transporter system, while nitrofurantoin resistance involves mutations in nfsA, nfsB, and ribE genes.
fosA3 overexpression with transporter mutations mediates high-level of fosfomycin resistance and silence of fosA3 in fosfomycin-susceptible Klebsiella pneumoniae producing carbapenemase clinical isolates.
The study identified fosA3 as a major contributor to fosfomycin resistance in carbapenemase-producing Klebsiella pneumoniae. Additionally, mutations or loss of glpT and/or uhpT were associated with high-level fosfomycin resistance. The silence of fosA3 was observed in some fosfomycin-susceptible isolates.
Genomic insights of Klebsiella pneumoniae isolated from a native Amazonian fish reveal wide resistome against heavy metals, disinfectants, and clinically relevant antibiotics.
The study identifies a multidrug-resistant Klebsiella pneumoniae strain carrying several AMR genes, including blaCTX-M-15, blaTEM-1B, blaSHV-27, aac(3)-IId, aadA1, sul2, tetB, tetD, fosA-like, oqxA, oqxB, and qnrE1, highlighting the potential of native Amazonian fish as reservoirs of clinically relevant AMR genes.
Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing.
The study compared hybrid assembly approaches for bacterial pathogen genomes and identified AMR genes such as blaZ, msr(A), and tet(K) in Staphylococcus aureus.
Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing.
The study compared hybrid assembly approaches for bacterial pathogen genomes and identified AMR genes such as blaZ, msr(A), and tet(K) in Staphylococcus aureus.
Emergence of NDM-5-Producing Carbapenem-Resistant Klebsiella pneumoniae and SIM-Producing Hypervirulent Klebsiella pneumoniae Isolated from Aseptic Body Fluid in a Large Tertiary Hospital, 2017-2018: Genetic Traits of blaNDM-Like and blaSIM-Like Genes as Determined by NGS.
The study identified NDM-5-producing CRKP and SIM-producing hvKP strains, highlighting the emergence of novel resistance mechanisms and the effectiveness of tigecycline-carbapenem combinations in treating these infections.
Detection of Tn7-Like Transposons and Antibiotic Resistance in Enterobacterales From Animals Used for Food Production With Identification of Three Novel Transposons Tn6813, Tn6814, and Tn6765.
The study identified three novel Tn7-like transposons (Tn6813, Tn6814, and Tn6765) in Enterobacterales isolates from food-producing animals in China, which carry multiple antibiotic resistance genes including blaDHA-1, qnrA1, aac(6')-Ib-cr, floR, mphE, msrE, and lunF. These transposons contribute to multidrug resistance in the isolates.
The New Klebsiellapneumoniae ST152 Variants with Hypermucoviscous Phenotype Isolated from Renal Transplant Recipients with Asymptomatic Bacteriuria-Genetic Characteristics by WGS.
The study identified several AMR genes in two hypermucoviscous Klebsiella pneumoniae isolates from renal transplant recipients, including bla CTX-M-15, aac(6')-Ib-cr, and others, indicating resistance to various antibiotics.
Identification and Characterization of a Novel FosA7 Member from Fosfomycin-Resistant Escherichia coli Clinical Isolates from Canadian Hospitals.
The study identifies and characterizes three fosA genes (fosA3, fosA8, and a novel fosA7.5) from fosfomycin-resistant E. coli clinical isolates, demonstrating their role in conferring resistance to fosfomycin.
A Multidrug-resistant Monophasic Salmonella Typhimurium Co-harboring mcr-1, fosA3, bla (CTX-M-14) in a Transferable IncHI2 Plasmid from a Healthy Catering Worker in China.
The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.
The study highlights the utility of whole genome sequencing (WGS) in monitoring antimicrobial resistance (AMR) trends, particularly in identifying ESBL genes such as bla CTX-M-1, bla CTX-M-15, bla SHV-12, bla CMY-2, and bla DHA-1, along with other resistance genes like sul2, tet(A), dfrA17, aadA5, ant3-1a, strA, strB, and fosA3 in E. coli isolates from pig surveillance.
Interplay among Different Fosfomycin Resistance Mechanisms in Klebsiella pneumoniae.
The study identified fosA as a key gene responsible for fosfomycin resistance in Klebsiella pneumoniae, and its inactivation significantly reduced resistance.
Colistin-resistant Enterobacter kobei carrying mcr-9.1 and bla(CTX-M-15) infecting a critically endangered franciscana dolphin (Pontoporia blainvillei), Brazil.
The study reports the emergence of the mcr-9.1 gene in a colistin-resistant Enterobacter kobei strain isolated from a critically endangered franciscana dolphin in Brazil, along with various other AMR genes.
Genomic Characterization of VIM and MCR Co-Producers: The First Two Clinical Cases, in Italy.
The study characterizes two clinical Enterobacter cloacae complex isolates co-producing VIM and MCR enzymes, identifying specific AMR genes and their resistance mechanisms.
A Longitudinal Evaluation of the Bacterial Pathogens Colonizing Chronic Non-Healing Wound Sites at a United States Military Treatment Facility in the Pacific Region.
The study identified multiple antimicrobial resistance genes in bacterial isolates from chronic non-healing wounds, including beta-lactamases, aminoglycoside modifying enzymes, macrolide resistance genes, and others. These genes were found in various bacterial species such as E. coli, S. aureus, P. aeruginosa, and others.
Genomic Features of MCR-1 and Extended-Spectrum β-Lactamase-Producing Enterobacterales from Retail Raw Chicken in Egypt.
The study identified mcr-1-positive Enterobacterales in retail chicken in Egypt, including Escherichia coli and Citrobacter freundii. It also found the fosA4 gene associated with fosfomycin resistance and various extended-spectrum β-lactamase (ESBL) genes such as bla CTX-M-9, bla CTX-M-14, bla CTX-M-15, and bla SHV-12.
Antibiotic Resistance and Phylogeny of Pseudomonas spp. Isolated over Three Decades from Chicken Meat in the Norwegian Food Chain.
The study identified several AMR genes and mutations in Pseudomonas spp. isolated from chicken meat in Norway, including beta-lactamases, efflux pumps, and genes involved in resistance to aminoglycosides, fluoroquinolones, and colistin.
Characterization of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Isolates from Jurong Lake, Singapore with Whole-Genome-Sequencing.
The study identified several extended-spectrum beta-lactamase (ESBL) genes, including bla CTX-M-15, bla CTX-M-8, bla CTX-M-27, bla CTX-M-14, and bla CTX-M-55, along with mcr-1.1 and mcr-3.1 for colistin resistance. Additionally, various other resistance genes such as qnrS1, mdf(A), mph(A), and others were found in the isolates, indicating multidrug resistance.
Detection of ESBL/AmpC-Producing and Fosfomycin-Resistant Escherichia coli From Different Sources in Poultry Production in Southern Brazil.
The study identified ESBL/AmpC-producing and fosfomycin-resistant E. coli in poultry farms in southern Brazil, highlighting the presence of bla CTX-M group 1, 2, and 8 genes, the cit gene, and the fosA3 gene as key contributors to antimicrobial resistance.
Endophytic Lifestyle of Global Clones of Extended-Spectrum β-Lactamase-Producing Priority Pathogens in Fresh Vegetables: a Trojan Horse Strategy Favoring Human Colonization?
The study identifies multiple AMR genes in endophytic ESBL-producing Enterobacterales isolated from fresh vegetables, highlighting their potential role in the spread of antibiotic resistance.
Multidrug Resistant Klebsiella pneumoniae ST101 Clone Survival Chain From Inpatients to Hospital Effluent After Chlorine Treatment.
The study identifies multiple AMR genes and mutations in multidrug-resistant Klebsiella pneumoniae ST101 clone, including blaCTX-M-15, blaOXA-48, blaOXA-1, blaSHV-106, blaTEM-150, aac(3)-IIa, aac(6')-Ib-cr, oqxA10, oqxB17, fosA, catB3, dfrA14, tet(D), and mutations in mgrB, ompK35, gyrA, and parC.
Emergence of fosA3 and bla (CTX-M-) (14) in Multidrug-Resistant Citrobacter freundii Isolates From Flowers and the Retail Environment in China.
The study identifies fosA3 and bla CTX-M-14 in multidrug-resistant Citrobacter freundii isolates from flowers and retail environments in China, highlighting the role of untypable plasmids in the spread of these resistance genes.
Identification of a Novel Hybrid Plasmid Encoding KPC-2 and Virulence Factors in Klebsiella pneumoniae Sequence Type 11.
The study identifies a novel hybrid plasmid, pCRHV-C2244, in a carbapenem-resistant Klebsiella pneumoniae ST11 isolate, which encodes the β-lactamase KPC-2 along with various virulence factors. The plasmid shows stable maintenance without significant fitness costs and enhances virulence in vitro and in vivo.
Full pathogen characterisation: species identification including the detection of virulence factors and antibiotic resistance genes via multiplex DNA-assays.
The study presents a DNA microarray-based assay for the simultaneous detection of 44 sepsis-relevant bacterial pathogens, 360 virulence factors, and 409 antibiotic resistance genes. The assay was evaluated with 14 multidrug-resistant strains, including all ESKAPE pathogens.
Institutional outbreak involving multiple clades of IMP-producing Enterobacter cloacae complex sequence type 78 at a cancer center in Tokyo, Japan.
The study identified multiple clades of IMP-producing Enterobacter cloacae complex sequence type 78 (ST78) strains causing an institutional outbreak. These strains carried blaIMP-1 and blaIMP-11 genes on IncHI2 and IncL/M plasmids, along with various other resistance genes such as aac(6')-IIc, qnrB6, fosA, sul1, and tet(B).
Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals.
The study identifies bla CTX-M-15 and bla KPC-3 as key resistance genes in Klebsiella pneumoniae isolates from Portuguese hospitals, along with fosA contributing to fosfomycin resistance. Methylation analysis reveals unique patterns around these genes.
Deceiving Phenotypic Susceptibility Results on a Klebsiella pneumoniae Blood Isolate Carrying Plasmid-Mediated AmpC Gene bla(DHA-1).
The study identifies a carbapenem-resistant Klebsiella pneumoniae isolate carrying the plasmid-mediated AmpC gene blaDHA-1, along with other resistance genes such as blaOXA-1, aac(6')-Ib-cr, aph(3')-Ia, sul1, oqxA, oqxB, qnrB4, arr-3, tet(A), catB3, mph(A), fosA, IncFIB(K), and IncR.
Clonal Clusters, Molecular Resistance Mechanisms and Virulence Factors of Gram-Negative Bacteria Isolated from Chronic Wounds in Ghana.
The study identified various AMR genes and mutations in Gram-negative bacteria isolated from chronic wounds in Ghana, including beta-lactamases, fosfomycin resistance genes, chloramphenicol resistance genes, aminoglycoside resistance genes, fluoroquinolone resistance genes, tetracycline resistance genes, sulfonamide resistance genes, trimethoprim resistance genes, and efflux pumps. Mutations in gyrA, parE, and parC were also found to contribute to fluoroquinolone resistance.
Persistent Bacterial Coinfection of a COVID-19 Patient Caused by a Genetically Adapted Pseudomonas aeruginosa Chronic Colonizer.
The study identifies several antimicrobial resistance genes in a genetically adapted Pseudomonas aeruginosa isolate from a COVID-19 patient, including aph(3')-IIb, blaOXA-395, blaPAO, fosA, and catB7, which confer resistance to aminoglycosides, beta-lactams, fosfomycin, and phenicols.
Coproduction of Tet(X7) Conferring High-Level Tigecycline Resistance, Fosfomycin FosA4, and Colistin Mcr-1.1 in Escherichia coli Strains from Chickens in Egypt.
The study identifies the coproduction of Tet(X7), FosA4, and Mcr-1.1 in E. coli strains from chickens in Egypt, highlighting the emergence of multidrug-resistant bacteria with resistance to tigecycline, fosfomycin, and colistin.
Genomic diversity and molecular epidemiology of Pasteurella multocida.
This study identified several antimicrobial resistance genes in Pasteurella multocida, including aminoglycoside, beta-lactam, tetracycline, macrolide, and sulfonamide resistance genes, highlighting the diverse resistance mechanisms present in this pathogen.
Emergence of High Level Carbapenem and Extensively Drug Resistant Escherichia coli ST746 Producing NDM-5 in Influent of Wastewater Treatment Plant, Seoul, South Korea.
The study reports the emergence of a high-level carbapenem-resistant and extensively drug-resistant (XDR) Escherichia coli strain N7 producing NDM-5, highlighting the presence of multiple resistance genes on plasmids and chromosomes.
Characterization of fosfomycin resistance and molecular epidemiology among carbapenem-resistant Klebsiella pneumoniae strains from two tertiary hospitals in China.
The study identified fosA3 and fosA5 as the main fosfomycin resistance genes in carbapenem-resistant Klebsiella pneumoniae strains, with fosA3 being the predominant mechanism. These genes were found on transferable plasmids and surrounded by insertion sequence IS26.
Characterization of fosfomycin resistance and molecular epidemiology among carbapenem-resistant Klebsiella pneumoniae strains from two tertiary hospitals in China.
The study identified fosA3 and fosA5 as the main fosfomycin resistance genes in carbapenem-resistant Klebsiella pneumoniae strains, with fosA3 being the predominant mechanism. These genes were found on transferable plasmids and surrounded by insertion sequence IS26.
Characterization of Antimicrobial Resistance Mechanisms in Clinical Isolates of Pseudomonas aeruginosa from a Cystic Fibrosis Patient
The study identified various AMR genes and mutations in P. aeruginosa isolates from a CF patient, including beta-lactamases, aminoglycoside-modifying enzymes, fluoroquinolone resistance genes, and mutations in regulatory and structural genes contributing to resistance against multiple antibiotics.
Prevalence and Antibiotic Resistance Characteristics of Extraintestinal Pathogenic Escherichia coli among Healthy Chickens from Farms and Live Poultry Markets in China.
The study identified bla CTX-M, bla NDM, mcr-1, and fosA3 as the major AMR genes in ExPEC isolates from healthy chickens in China, highlighting the presence of multidrug-resistant ExPEC, including those carrying mcr-1 and bla NDM.
Convergent phenotypic evolution towards fosfomycin collateral sensitivity of Pseudomonas aeruginosa antibiotic-resistant mutants.
The study identifies that reduced expression of fosA and the peptidoglycan-recycling pathway genes leads to fosfomycin collateral sensitivity in Pseudomonas aeruginosa antibiotic-resistant mutants.
Clonal spread of Escherichia coli O101: H9-ST10 and O101: H9-ST167 strains carrying fosA3 and bla (CTX-M-14) among diarrheal calves in a Chinese farm, with Australian Chroicocephalus as the possible origin of E. coli O101: H9-ST10.
The study identified fosA3 and bla(CTX-M-14) as key genes responsible for fosfomycin and beta-lactam resistance in E. coli O101:H9-ST10 and O101:H9-ST167 strains isolated from diarrheal calves in a Chinese farm. The fosA3 gene was found to be chromosomally located in some isolates and plasmid-borne in others, while bla(CTX-M-14) was co-localized with fosA3 on plasmids.
Molecular Epidemiology of Fosfomycin Resistant E. coli from a Pigeon Farm in China.
The study identified a high prevalence of fosA3-positive E. coli isolates in a pigeon farm in China, highlighting the role of horizontal and clonal transfer in the spread of fosfomycin resistance.
Wide Distribution and Specific Resistance Pattern to Third-Generation Cephalosporins of Enterobacter cloacae Complex Members in Humans and in the Environment in Guadeloupe (French West Indies).
The study identifies several AMR genes and mutations associated with third-generation cephalosporin resistance in Enterobacter cloacae complex, including blaACT-16, blaACT-15, blaACT-7, qnrB1, qnrB19, qnrS2, fosA, oqxA, oqxB, mdfA, and mutations in ampD.
Outbreak of NDM-1-producing Klebsiella pneumoniae in the intensive care unit during the COVID-19 pandemic: Another nightmare.
The study reports an outbreak of NDM-1-producing Klebsiella pneumoniae in an ICU during the COVID-19 pandemic, highlighting the presence of multiple AMR genes including blaNDM-1, blaTEM-1, blaCTX-M-15, blaOXA-1, blaCMY-4, and others, along with mutations in ParC and GyrA contributing to quinolone resistance.
Co-occurrence of fosA5, bla(SHV-145) and bla(OXA-48) among a Klebsiella pneumoniae high-risk ST16 from a tertiary hospital in China: focusing on the phylogeny of OXA-48 genes from global Klebsiella pneumoniae isolates.
The study reports the co-occurrence of fosA5, bla(SHV-145), and bla(OXA-48) in a Klebsiella pneumoniae ST16 isolate from China, highlighting the presence of multiple antimicrobial resistance genes.
Detection and Characterization of Clinical Bordetella trematum Isolates from Chronic Wounds.
The study identified the presence of sul2, aminoglycoside resistance gene aadA, fosfomycin resistance gene fosA, and fluoroquinolone resistance gene gyrB in all three B. trematum isolates. Additionally, isolate two carried a beta-lactamase gene (bla) conferring resistance to ampicillin and ampicillin/sulbactam.
Whole Genome Sequencing of Pediatric Klebsiella pneumoniae Strains Reveals Important Insights Into Their Virulence-Associated Traits.
The study identified various AMR genes in K. pneumoniae strains, including beta-lactamases (blaSHV, blaOXA, blaTEM, blaCTX-M), fosfomycin resistance (fosA), quinolone resistance (oqxA, qnrB), chloramphenicol resistance (catB3), aminoglycoside resistance (aac(3), aadA1, strB), sulfonamide resistance (sul1), trimethoprim resistance (dfrA), and tetracycline resistance (tet(A)).
Genetic Diversity of Multidrug-Resistant Pseudomonas aeruginosa Isolates Carrying bla (VIM-2) and bla (KPC-2) Genes That Spread on Different Genetic Environment in Colombia.
The study identifies bla(VIM-2) and bla(KPC-2) genes in multidrug-resistant Pseudomonas aeruginosa isolates from Colombia, highlighting their diverse genetic environments and mechanisms of resistance.
Infective endocarditis caused by Enterobacteriaceae: phenotypic and molecular characterization of Escherichia coli and Klebsiella pneumoniae in Rio de Janeiro, Brazil.
The study identified several AMR genes in E. coli and K. pneumoniae isolates causing infective endocarditis, including genes conferring resistance to beta-lactams, aminoglycosides, sulfonamides, trimethoprim, fosfomycin, and fluoroquinolones. These genes were detected through molecular analysis and resistance profiling.
Infective endocarditis caused by Enterobacteriaceae: phenotypic and molecular characterization of Escherichia coli and Klebsiella pneumoniae in Rio de Janeiro, Brazil.
The study identified several AMR genes in E. coli and K. pneumoniae isolates causing infective endocarditis, including genes conferring resistance to beta-lactams, aminoglycosides, sulfonamides, trimethoprim, fosfomycin, and fluoroquinolones. These genes were detected through molecular analysis and resistance profiling.
Whole-Genome Sequencing (WGS) of Carbapenem-Resistant K. pneumoniae Isolated in Long-Term Care Facilities in the Northern Italian Region.
The study identified various carbapenem-resistance genes including blaKPC-2, blaKPC-3, blaKPC-9, blaSHV-11, blaSHV-28, blaCTX-M-15, blaOXA-1, blaOXA-9, blaOXA-23, qnrS1, qnrB19, qnrB66, aac(6')-Ib-cr, and fosA in carbapenem-resistant K. pneumoniae isolates from long-term care facilities in northern Italy.
Antimicrobial Resistance and Type III Secretion System Virulotypes of Pseudomonas aeruginosa Isolates from Dogs and Cats in Primary Veterinary Hospitals in Japan: Identification of the International High-Risk Clone Sequence Type 235.
The study identifies various AMR genes and mutations in P. aeruginosa isolates from dogs and cats in Japan, highlighting the presence of high-risk clones like ST235 and the role of genetic factors in carbapenem and fluoroquinolone resistance.
Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales.
The study characterizes a pESI-like plasmid harboring multiple resistance genes, including bla CTX-M-65, in multidrug-resistant Salmonella enterica Infantis isolates from England and Wales. The plasmid was associated with resistance to beta-lactams, aminoglycosides, chloramphenicol, tetracyclines, trimethoprim, sulfonamides, fosfomycin, and heavy metals.
Selective Culture Medium for Screening of Fosfomycin Resistance in Enterobacterales.
The study developed a selective culture medium called SuperFOS for screening fosfomycin-resistant Enterobacterales. It successfully detected fosfomycin resistance in various strains, including those harboring plasmid-mediated resistance genes such as fosA3, fosA4, fosA8, and fosL1.
Selective Culture Medium for Screening of Fosfomycin Resistance in Enterobacterales.
The study developed a selective culture medium called SuperFOS for screening fosfomycin-resistant Enterobacterales. It successfully detected fosfomycin resistance in various strains, including those harboring plasmid-mediated resistance genes such as fosA3, fosA4, fosA8, and fosL1.
Identification of Three Novel PmGRI1 Genomic Resistance Islands and One Multidrug Resistant Hybrid Structure of Tn7-like Transposon and PmGRI1 in Proteus mirabilis.
The study identifies three novel variants of PmGRI1 and a hybrid structure combining Tn7-like transposon and PmGRI1 in Proteus mirabilis, highlighting their role in carrying multiple antibiotic resistance genes.
Transmission Dynamics of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 Strains Carrying Capsular Loci KL64 and rmpA/rmpA2 Genes.
The study identified multiple AMR genes and mutations in ST11-KL64 CRKP isolates, including bla KPC-2, rmtB, catA2, fosA, qnrS1, sul2, tet(A), aadA2, dfrA14, bla CTX-M-65, bla SHV-12, bla TEM-1B, iucABCD, iutA, rmpA2, and mutations in GyrA (S83I, D87G) and ParC (S80I).
Co-occurrence of Klebsiella variicola and Klebsiella pneumoniae Both Carrying bla (KPC) from a Respiratory Intensive Care Unit Patient.
The study identified Klebsiella variicola and Klebsiella pneumoniae strains carrying multiple resistance genes, including bla KPC-2, bla TEM-1A, bla LEN17, aadA16, arr-3, qnrB4, oqxA/B, dfrA27, sul1, tetD, fosA, qacEΔ1, bla CTX-M-3, bla TEM-1B, bla CTX-M-65, bla SHV-27, aac(6')-IIa, rmtB, aph(3')-Ia, aadA16, qnrS1, aac(6')-Ib-cr, qnrB91, oqxA/B, mph(A), tet(A), fosA, dfrA27, and two copies of qacEΔ1-sul1.
Differences in Fosfomycin Resistance Mechanisms between Pseudomonas aeruginosa and Enterobacterales.
The study identifies several genes and mechanisms contributing to fosfomycin resistance in Pseudomonas aeruginosa, including peptidoglycan recycling enzymes (mupP, amgK, murU), the glpT transporter, and the chromosomal fosA gene.
Co-conjugation of Virulence Plasmid and KPC Plasmid in a Clinical Klebsiella pneumoniae Strain.
The study characterizes a carbapenem-resistant hypervirulent Klebsiella pneumoniae strain that harbors a conjugative virulence plasmid and a bla KPC–2-bearing plasmid. The virulence plasmid contains multiple resistance genes, including bla KPC–2, qnrB4, bla DHA–1, sul1, msr(E), mph(E), bla TEM–1B, aac(3)-IId, bla SHV–12, mph(A), bla CTX–M–65, bla TEM–1B, fosA3, and rmtB. The study also shows that these plasmids can be transferred to other bacterial strains, contributing to the spread of multidrug-resistant and hypervirulent K. pneumoniae.
CRISPR Element Patterns vs. Pathoadaptability of Clinical Pseudomonas aeruginosa Isolates from a Medical Center in Moscow, Russia.
The study identified multiple antibiotic resistance genes in clinical Pseudomonas aeruginosa isolates, including blaVIM-2, blaOXA-396, blaOXA-488, floR, tetG, sul1, dfrA5, dfrB2, dfrB5, aph(3)-Ib, blaPAO, catB7, and fosA, which confer resistance to various antibiotics such as beta-lactams, chloramphenicol, tetracycline, sulfonamides, trimethoprim, aminoglycosides, and fosfomycin.
Antimicrobial Resistance and Genomic Characterization of Six New Sequence Types in Multidrug-Resistant Pseudomonas aeruginosa Clinical Isolates from Pakistan.
The study identified 13 acquired antibiotic resistance genes in six new sequence types of multidrug-resistant Pseudomonas aeruginosa isolates from Pakistan, including beta-lactamases, aminoglycoside-modifying enzymes, and others. Mutations in the pmrA gene were also found to contribute to colistin resistance.
A Novel Multidrug Resistant, Non-Tn4401 Genetic Element-Bearing, Strain of Klebsiella pneumoniae Isolated From an Urban Lake With Drinking and Recreational Water Reuse.
The study identifies a multidrug-resistant Klebsiella pneumoniae strain, ST5236, carrying the beta-lactamase gene blaCTX-M-15, the carbapenemase gene blaKPC-2, and the fosfomycin resistance gene fosA, along with efflux pumps oqxAB and acrAB, and heavy metal resistance genes fieF and arsC.
Whole-Genome Sequencing of Gram-Negative Bacteria Isolated From Bovine Mastitis and Raw Milk: The First Emergence of Colistin mcr-10 and Fosfomycin fosA5 Resistance Genes in Klebsiella pneumoniae in Middle East.
The study reports the first emergence of colistin resistance gene mcr-10 and fosfomycin resistance gene fosA5 in Klebsiella pneumoniae isolated from bovine milk in the Middle East.
Occurrence and molecular epidemiology of fosA3-bearing Escherichia coli from ducks in Shandong province of China.
The study identified fosA3 as a prevalent plasmid-mediated fosfomycin resistance gene in Escherichia coli from ducks in Shandong, China, with high rates of multidrug resistance and horizontal gene transfer.
Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147.
The study identifies multiple AMR genes and mutations in the pandrug-resistant K. pneumoniae strain DJ, including carbapenemases (bla NDM-5, bla OXA-181, bla CTX-M-15), aminoglycoside resistance genes (rmtB, rmtF, aac(6')-Ib, aadA2, strAB), sulfonamide resistance genes (sul1, sul2), dihydrofolate reductase (dfrA12), polymyxin resistance gene (mgrB), tetracycline resistance gene (ramR), chloramphenicol resistance genes (catA2, catB), fosfomycin resistance gene (fosA), and macrolide resistance genes (mphA, ermB). Mutations in gyrA, parC, ompK35, ompK36, and ramR contribute to resistance to fluoroquinolones, polymyxins, tetracyclines, and other antibiotics.
The Genomic Characterization of KPC-Producing Klebsiella pneumoniae from the ICU of a Teaching Hospital in Shanghai, China.
The study identified the carbapenemase gene blaKPC-2 and blaKPC-24, along with fosfomycin resistance gene fosA6, and various extended-spectrum beta-lactamase genes such as blaCTX-M-15, blaCTX-M-65, and blaCTX-M-27 in KPC-producing Klebsiella pneumoniae strains. Additionally, genes associated with fluoroquinolone, macrolide, aminoglycoside, and sulfonamide resistance were also characterized.
The Co-occurrence of NDM-5, MCR-1, and FosA3-Encoding Plasmids Contributed to the Generation of Extensively Drug-Resistant Klebsiella pneumoniae.
The study identified the co-occurrence of NDM-5, MCR-1, and FosA3-encoding plasmids in an extensively drug-resistant Klebsiella pneumoniae isolate, contributing to resistance against multiple antibiotics including carbapenems, colistin, and fosfomycin.
One Health Genomic Study of Human and Animal Klebsiella pneumoniae Isolated at Diagnostic Laboratories on a Small Caribbean Island.
The study identified various AMR genes in Klebsiella pneumoniae isolates from humans and animals on St. Kitts, including bla CTX-M-15, bla TEM-1b, bla TEM-206, bla OXA-1, and others, highlighting host-specific differences in resistance profiles.
One Health Genomic Study of Human and Animal Klebsiella pneumoniae Isolated at Diagnostic Laboratories on a Small Caribbean Island.
The study identified various AMR genes in Klebsiella pneumoniae isolates from humans and animals on St. Kitts, including bla CTX-M-15, bla TEM-1b, bla TEM-206, bla OXA-1, and others, highlighting host-specific differences in resistance profiles.
First Description of Ceftazidime/Avibactam Resistance in a ST13 KPC-70-Producing Klebsiella pneumoniae Strain from Portugal.
The study reports the first description of ceftazidime/avibactam resistance in a ST13 KPC-70-producing Klebsiella pneumoniae strain from Portugal. The strain was found to harbor the blaKPC-70 gene, a variant of blaKPC-3 with two amino acid substitutions (D179Y and T263A), which conferred resistance to several β-lactam antibiotics.
Genetic Characterization of Antibiotic Resistant Enterobacteriaceae Isolates From Bovine Animals and the Environment in Nigeria.
The study characterizes antibiotic resistance genes in Enterobacteriaceae isolates from bovine animals and the environment in Nigeria, identifying several beta-lactamase, aminoglycoside modifying enzymes, qnr, sulfonamide, tetracycline, and trimethoprim resistance genes, highlighting the presence of multidrug-resistant strains.
Emergence of Carbapenem-Resistant ST244, ST292, and ST2446 Pseudomonas aeruginosa Clones in Burn Patients in Yunnan Province.
Genomics of human and chicken Salmonella isolates in Senegal: Broilers as a source of antimicrobial resistance and potentially invasive nontyphoidal salmonellosis infections.
The study identified multiple antimicrobial resistance genes and mutations in Salmonella isolates from Senegal, highlighting the prevalence of resistance to fluoroquinolones, sulfamethoxazole-trimethoprim, tetracycline, and erythromycin. Key genes included aac(3)-Id, aadA7, blaTEM-1b, blaDHA-1, blaOXA-10, blaCMY-2, dfrA1, dfrA14, floR, fosA, qnrB19, qnrB7, sul2, tetA, tetB, aph(3')-Ib, aph(3")-Ib, and aph(6)-Id. Mutations in parC and gyrA were also associated with fluoroquinolone resistance.
Whole Genome Sequence Analysis of Multidrug Resistant Escherichia coli and Klebsiella pneumoniae Strains in Kuwait.
The study identified multiple AMR genes in multidrug-resistant E. coli and K. pneumoniae isolates from Kuwait, including beta-lactamases (blaKPC-2, blaCTX-M-15, blaOXA-1, blaCMY-4, blaTEM), aminoglycoside-modifying enzymes (aac(3)-IIa, aph(6)-Id, aadA5), sulfonamide resistance genes (sul1, sul2), quinolone resistance genes (gyrA_D87N, qnrB1), and others. Colistin resistance was linked to the pmrB_R256G mutation.
WGS-Based Phenotyping and Molecular Characterization of the Resistome, Virulome and Plasmid Replicons in Klebsiella pneumoniae Isolates from Powdered Milk Produced in Germany.
The study identified multiple AMR genes in K. pneumoniae isolates from powdered milk, including blaSHV variants, oqx genes, fosA, pmrB_R256G, and mcr-9. These genes conferred resistance to beta-lactams, chloramphenicol, quinolones, fosfomycin, and colistin. Despite some isolates carrying mcr-9, they remained susceptible to colistin.
Genomic heterogeneity underlies multidrug resistance in Pseudomonas aeruginosa: A population-level analysis beyond susceptibility testing.
Large-Scale Genomic Epidemiology of Klebsiella pneumoniae Identified Clone Divergence with Hypervirulent Plus Antimicrobial-Resistant Characteristics Causing Within-Ward Strain Transmissions.
The study identified clone divergence in Klebsiella pneumoniae, particularly highlighting the emergence of hypervirulent plus antimicrobial-resistant (hv+AMR) subclones. Key AMR genes such as bla KPC-2, bla CTX-M-65, and others were characterized, along with virulence factors like rmpA, rmpA2, and ybt.
Comparison of Two Distinct Subpopulations of Klebsiella pneumoniae ST16 Co-Occurring in a Single Patient.
The study identifies multiple AMR genes and mutations in Klebsiella pneumoniae ST16 isolates, including bla NDM-4, bla OXA-181, and a frameshift mutation in acrR, contributing to carbapenem and fluoroquinolone resistance.
Multidrug Resistance Genes Carried by a Novel Transposon Tn7376 and a Genomic Island Named MMGI-4 in a Pathogenic Morganella morganii Isolate.
The study identifies a novel transposon Tn7376 and a genomic island MMGI-4 in a multidrug-resistant Morganella morganii isolate, carrying multiple antimicrobial resistance genes including dfrA24, mph(A), aadA1, sul1, floR, catA2, cmlA1, aph(3')-Ia, aac(6')-Ib-cr, tet(A), tet(B), arr-3, blaTEM-1B, blaDHA-17, blaCARB-2, blaOXA-1, blaCTX-M-3, and fosA3.
An Outbreak of ST859-K19 Carbapenem-Resistant Hypervirulent Klebsiella pneumoniae in a Chinese Teaching Hospital.
The study reports an outbreak of ST859-K19 carbapenem-resistant hypervirulent Klebsiella pneumoniae (CR-hvKP) in a Chinese hospital, identifying several resistance and virulence genes, including blaKPC-2, blaTEM-1B, blaSHV-187, rmtB, qnrS1, fosA6, and various virulence factors.
Submarine Outfalls of Treated Wastewater Effluents are Sources of Extensively- and Multidrug-Resistant KPC- and OXA-48-Producing Enterobacteriaceae in Coastal Marine Environment.
The study identified extensively drug-resistant (XDR) and multidrug-resistant (MDR) KPC- and OXA-48-producing Enterobacteriaceae in coastal marine environments, highlighting the presence of various AMR genes including bla KPC-2, bla OXA-48, and others.
Genomic Analysis of Multidrug-Resistant Hypervirulent (Hypermucoviscous) Klebsiella pneumoniae Strain Lacking the Hypermucoviscous Regulators (rmpA/rmpA2).
The study identified multiple antimicrobial resistance genes in a multidrug-resistant hypervirulent Klebsiella pneumoniae strain, including beta-lactamases, sulfonamide resistance genes, fosfomycin resistance genes, aminoglycoside resistance genes, and tetracycline resistance genes.
KPC-3-, GES-5-, and VIM-1-Producing Enterobacterales Isolated from Urban Ponds.
The study identified bla KPC-3, bla GES-5, and bla VIM genes in various Enterobacterales isolates from urban ponds, highlighting their role in carbapenem resistance.
High-Frequency Detection of fosA3 and bla (CTX-M-55) Genes in Escherichia coli From Longitudinal Monitoring in Broiler Chicken Farms.
The study identified the high-frequency detection of fosA3 and bla CTX-M-55 genes in Escherichia coli from broiler chicken farms, highlighting their association with multidrug resistance and the potential for horizontal gene transfer.
Naturalized Escherichia coli in Wastewater and the Co-evolution of Bacterial Resistance to Water Treatment and Antibiotics.
The study highlights the role of wastewater treatment plants as hotspots for the dissemination and selection of antibiotic resistance, emphasizing the co-evolution of resistance to both antibiotics and water treatment processes. It identifies several naturally occurring beta-lactamase genes (blaOXA-54 and blaOXA-181) and a qnr gene, which confer resistance to carbapenems and quinolones, respectively.
Epidemiological Characteristics of OXA-232-Producing Carbapenem-Resistant Klebsiella pneumoniae Strains Isolated during Nosocomial Clonal Spread Associated with Environmental Colonization.
The study identified OXA-232-producing carbapenem-resistant Klebsiella pneumoniae (CRKP) strains that exhibited multidrug resistance, including resistance to carbapenems, cephalosporins, aminoglycosides, and quinolones. The strains were part of a clonal spread within the ICU, showing genetic similarities and carrying resistance genes such as blaOXA-232, blaCTX-M-15, blaSHV-106, and others.
Genomic Analysis of Two MDR Isolates of Salmonella enterica Serovar Infantis from a Spanish Hospital Bearing the bla(CTX-M-65) Gene with or without fosA3 in pESI-like Plasmids.
The study reports two multidrug-resistant (MDR) isolates of Salmonella enterica serovar Infantis from Spain carrying the blaCTX-M-65 gene on pESI-like plasmids, along with other resistance genes such as floR, aac(3)-IVa, aph(3′)-Ia, aph(4)-Ia, aadA1, tet(A), sul1, dfrA14, and fosA3. Mutations in gyrA and parC were associated with fluoroquinolone resistance, while truncations in nsfA and nsfB were linked to nitrofurantoin resistance.
Non-carbapenemase producing carbapenem-resistant Klebsiella pneumoniae isolated from the urinary tract of a dog.
The study identifies a non-carbapenemase-producing carbapenem-resistant Klebsiella pneumoniae isolate from a dog's urine, with resistance mechanisms involving efflux pumps (acrAB) and porin gene mutations, along with the presence of bla CMY-2, fosA, and oqxAB genes.
First Report of bla (CTX-M-167), bla (SHV-1), and bla (TEM-1B) Carrying Klebsiella pneumonia Showing High-Level Resistance to Carbapenems.
The study identifies the first report of a carbapenem-resistant Klebsiella pneumoniae strain carrying bla CTX-M-167, bla TEM-1B, and bla SHV-1, along with other resistance genes such as qnrS1, aac(6')-1b-cr, aadA16, tet(A), fosA, sul1, and mph(A).
Molecular characterization of extended spectrum cephalosporin resistant Escherichia coli isolated from livestock and in-contact humans in Southeast Nigeria.
The study identified four variants of bla CTX-M (CTX-M-15, CTX-M-55, CTX-M-64, and CTX-M-65) in extended-spectrum cephalosporin-resistant Escherichia coli from livestock and in-contact humans in Southeast Nigeria. Other AMR genes such as bla TEM-1b, aac 3-IId, qnr S1, and sul 2 were also characterized.
Resensitization of Fosfomycin-Resistant Escherichia coli Using the CRISPR System.
The study demonstrates the successful resensitization of fosfomycin-resistant Escherichia coli by disrupting the fosA3 gene using a CRISPR-Cas9 system, restoring susceptibility to fosfomycin.
A Trade-Off for Maintenance of Multidrug-Resistant IncHI2 Plasmids in Salmonella enterica Serovar Typhimurium through Adaptive Evolution.
The study identifies the stability of clinically relevant ARGs carried by evolved plasmids, showing that their stability depends on antibiotic treatment conditions. Key genes include mcr-1, bla CTX-M-14, oqxAB, floR, and fosA3, which were consistently detected in evolved clones and correlate with resistance phenotypes.
Molecular characterization of multi drug resistant Escherichia coli isolates at a tertiary hospital in Abuja, Nigeria.
The study identified several AMR genes in multi-drug resistant E. coli isolates, including bla CTX-M-15, bla CTX-M-14, bla CTX-M-27, bla CTX-M-65, bla OXA-1, bla OXA-2, bla CMY-2, bla NDM-1, bla NDM-5, aac(3)-IId, aac(3)-IIe, aac(6')-Ib-cr, aad A5, ant(2′′)-Ia, aph(3′′)-Ib, aph(3′′)-VI, aph(6)-Id, ermB, ermD, fosA3, fosA7, mdtM, emrD, sul1, sul2, sul3, tetA, tetB, tetM, dfrA1, dfrA7, dfrA8, dfrA12, dfrA14, dfrA17, dfrA82, dfrB4, qepA, qepA1, qepA2, qepA4, qnrB19, qnrS1, qacE, catA1, catA2, catB3, cmlA1, mphA.
Resistance Phenotype and Molecular Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolated from Nanjing Children's Hospital in Jiangsu Province, China.
The study identified several carbapenemase genes, including blaKPC-2, blaNDM-1, blaNDM-5, blaIMP-8, and blaOXA-181, as well as other resistance genes such as blaCTX-M, blaSHV-2, APH(3)-IB, APH(6)-ID, FosA5, tetC, qnrB1, and tetA, contributing to multidrug resistance in CRKP strains isolated from children in Nanjing, China.
WGS-Based Lineage and Antimicrobial Resistance Pattern of Salmonella Typhimurium Isolated during 2000-2017 in Peru.
The study identifies 63 different AMR genes in 90 S. Typhimurium isolates from Peru, including beta-lactamases (blaTEM-181, blaSHV-12, blaSHV-134, blaCTX-M-15), quinolone resistance genes (qnrB5, qnrB19, qnrE2), tetracycline resistance genes (tetA, tetD, tetR), sulfonamide resistance genes (sul3), dihydrofolate reductase (dfrA1, dfrA12), florfenicol resistance gene (floR), lincomycin resistance gene (linG), aminoglycoside resistance genes (aph(3″)-Ib, aph(6)-Id, aadA2), colistin resistance gene (mcr-1), and fosfomycin resistance gene (fosA3).
Rhizocarpon geographicum Lichen Discloses a Highly Diversified Microbiota Carrying Antibiotic Resistance and Persistent Organic Pollutant Tolerance.
The study identified multiple AMR genes in lichen-associated bacteria, including beta-lactamases, efflux pump components, and enzymes conferring resistance to various antibiotics. These findings highlight the diverse AMR profiles of bacteria inhabiting extreme environments.
Antimicrobial resistance of Salmonella Indiana from retail chickens in China and emergence of an mcr-1-harboring isolate with concurrent resistance to ciprofloxacin, cefotaxime, and colistin.
The study identified multiple AMR genes in Salmonella Indiana isolates, including bla CTX-M-65, bla CTX-M-14, bla CTX-M-27, bla CTX-M-28, bla CTX-M-79, aac(6')-Ib-cr, oqxAB, and mcr-1, which contribute to resistance against various antibiotics.
Resistance and virulence features of hypermucoviscous Klebsiella pneumoniae from bloodstream infections: Results of a nationwide Italian surveillance study.
The study identified various AMR genes in hypermucoviscous Klebsiella pneumoniae isolates, including bla KPC-3, bla KPC-2, CMY-16, CTX-M-15, bla SHV-2, bla DHA-1, bla CTX-M-65, qnr, aadA1, aac(6')-Ib, sul1, dfrA1, mph(A), erm(B), floR, and fosA3. These genes conferred resistance to multiple antibiotics, including carbapenems, cephalosporins, fluoroquinolones, aminoglycosides, sulfonamides, trimethoprim, macrolides, and fosfomycin.
Human pandemic K27-ST392 CTX-M-15 extended-spectrum β-lactamase-positive Klebsiella pneumoniae: A one health clone threatening companion animals.
The study identifies a multidrug-resistant K. pneumoniae strain (LCKp01) carrying the bla CTX-M-15 gene and other clinically important AMR genes, highlighting the global spread of this clone in both human and animal populations.
Emergence of Fosfomycin Resistance by Plasmid-Mediated fos Genes in Uropathogenic ESBL-Producing E. coli Isolates in Mexico.
The study identifies fosA1 and fosA3 as plasmid-mediated fosfomycin resistance genes in uropathogenic ESBL-producing E. coli isolates in Mexico, highlighting their prevalence and potential for horizontal transmission.
Emergence of a Novel Lineage and Wide Spread of a bla(CTX-M-15)/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe.
The study identifies the bla CTX-M-15 gene as the most prevalent ESBL determinant in ESBL-producing Enterobacter cloacae complex isolates, along with the IncHI2/ST1 plasmid. It also reports the presence of other resistance genes such as mcr-9, aac(3)-IIa, aac(6′)-Ib-cr, aph(3″)-Ib, aph(6)-Id, bla OXA-1, bla TEM-1B, qnrB1, fosA, sul2, tet(A), dfrA14, ars, mer, tni, and the ter operon.
Clonal Dissemination of Multidrug-Resistant and Hypervirulent Klebsiella pneumoniae Clonal Complex in a Chinese Hospital.
The study identifies multiple lineages of carbapenem-resistant hypervirulent Klebsiella pneumoniae (cr-hvKp) within the CC15 clonal complex, highlighting the dissemination of resistance genes such as bla KPC-2, bla SHV-28, and bla TEM-1B, along with virulence plasmids contributing to hypervirulence.
Whole-Genome Sequencing-Based Species Classification, Multilocus Sequence Typing, and Antimicrobial Resistance Mechanism Analysis of the Enterobacter cloacae Complex in Southern China.
The study identified 80 antibiotic resistance genes in 172 Enterobacter cloacae complex isolates, with a focus on beta-lactamases, aminoglycosides, and fluoroquinolones. Key genes included blaACT-2, blaACT-3, blaACT-6, blaACT-9, blaACT-12, blaTEM-1D, blaCTX-M-3, blaSHV-12, blaNDM-1, blaNDM-5, blaIMP-1, blaIMP-4, blaIMP-26, blaKPC-2, qnrS2, qnrE1, aac(6')-Ib, aac(6')-IIc, aph(3')-Ib, aph(6)-Id, aadA, sul2, dfrA12, tetA, ereA, floR, catA2, mcr-10, arr-6, and fosA3.
Genomic Study of Chromosomally and Plasmid-Mediated Multidrug Resistance and Virulence Determinants in Klebsiella Pneumoniae Isolates Obtained from a Tertiary Hospital in Al-Kharj, KSA.
The study identified several AMR genes in K. pneumoniae isolates, including blaOXA-1, blaCTX-M-3, blaOXA-232, catB3, aac(6')-Ib-cr, dfrA14, IntI1, IS1, RepE, qnrB4, qnrB55, qnrS1, aph(3")-Ib, sul2, aadA2, SHV-190, SHV-26, SHV-11, tet(A), fosA, OqxA, and OqxB, which confer resistance to various antibiotics such as beta-lactams, aminoglycosides, trimethoprim, quinolones, sulfonamides, and fosfomycin.
Identification of KPC-112 from an ST15 Klebsiella pneumoniae Strain Conferring Resistance to Ceftazidime-Avibactam.
The study identifies a novel KPC variant, KPC-112, which confers resistance to ceftazidime-avibactam. Additionally, various other resistance genes and mutations were characterized, contributing to multidrug resistance in the isolate.
The hazard of carbapenemase (OXA-181)-producing Escherichia coli spreading in pig and veal calf holdings in Italy in the genomics era: Risk of spill over and spill back between humans and animals.
The study identifies multiple AMR genes, including bla OXA-181, bla TEM-1B, aac (3)-IId, aad A2, cml A1, dfr A12, mef (B), sul 3, tet (A), tet (M), incX3, incX1, incFII, qnr S1, aph (3″)-Ib, aph (6)-Id, flo R, lnu (F), sul 2, sul 3, tet (B), mph (A), mph (G), qnr B4, rmt B, and fos A3, in OXA-181-producing E. coli isolates from pigs and bovines in Italy. These genes confer resistance to various antibiotics, including carbapenems, cephalosporins, penicillins, aminoglycosides, trimethoprim, macrolides, sulfonamides, tetracyclines, fluoroquinolones, and fosfomycin.
Identification of a Multidrug Resistant Pseudomonas aeruginosa Isolate Harboring Infrequent Red Fluorescence Plasmid from COPD Patient.
The study identifies a multidrug-resistant Pseudomonas aeruginosa isolate L1a harboring an infrequent red fluorescence plasmid. The isolate shows resistance to several antibiotics including levofloxacin, cefepime, aztreonam, and imipenem, and carries multiple drug resistance genes and efflux pump-related genes.
Contamination of Proteus mirabilis harbouring various clinically important antimicrobial resistance genes in retail meat and aquatic products from food markets in China.
The study identified various clinically important antimicrobial resistance genes in Proteus mirabilis strains isolated from retail meat and aquatic products in China, highlighting the potential risk of these genes spreading to other pathogens.
Molecular and Clinical Characteristics of Carbapenem-Resistant Klebsiella pneumoniae Isolates at a Tertiary Hospital in Wuhan, China.
The study identified multiple carbapenem-resistant Klebsiella pneumoniae (CRKP) isolates carrying various resistance genes, including blaKPC-1, blaCTX-M-65, blaTEM-1, blaSHV-182, rmtB, aadA2, APH(3')-Ia, sul1, sul2, QnrS1, mphA, FosA6, floR, and tet(A). These genes confer resistance to carbapenems, beta-lactams, aminoglycosides, sulfonamides, fluoroquinolones, macrolides, fosfomycin, chloramphenicol, and tetracyclines.
First Report of IMI-2-Producing Enterobacter bugandensis and CTX-M-55-Producing Escherichia coli isolated from Healthy Volunteers in Tunisia.
The study reports the first detection of IMI-2-producing Enterobacter bugandensis and CTX-M-55-producing Escherichia coli in healthy volunteers in Tunisia, highlighting the presence of extended-spectrum beta-lactamases and carbapenemases in the fecal microbiota of healthy individuals.
Antimicrobial Susceptibility and Molecular Features of Colonizing Isolates of Pseudomonas aeruginosa and the Report of a Novel Sequence Type (ST) 3910 from Thailand.
The study identified several antimicrobial resistance genes in Pseudomonas aeruginosa colonizing isolates, including bla OXA-50, aph(3′)-IIb, fosA, bla PAO, catB7, and crpP, which confer resistance to beta-lactam, aminoglycoside, fosfomycin, chloramphenicol, and ciprofloxacin. A novel sequence type ST-3910 was also reported.
Antimicrobial Resistance and Genetic Diversity of Pseudomonas aeruginosa Strains Isolated from Equine and Other Veterinary Samples.
The study identified several AMR genes in Pseudomonas aeruginosa strains isolated from equine and other veterinary samples, including beta-lactamases, aminoglycoside modifying enzymes, quinolone resistance genes, sulfonamide resistance genes, phenicol resistance genes, tetracycline resistance genes, and efflux pumps. Additionally, genes conferring resistance to quaternary ammonium compounds were detected.
Molluscs-A ticking microbial bomb.
The paper discusses the presence of antibiotic resistance genes (ARGs) in bivalve molluscs, highlighting the spread of resistance to various antibiotics such as colistin, beta-lactams, fluoroquinolones, and tetracyclines. It emphasizes the role of bivalve aquacultures in the dissemination of ARGs and the potential risks to human health through the food chain.
Molecular insights into novel environmental strains of Klebsiella quasipneumoniae harboring different antimicrobial-resistance genes.
The study identified multiple antimicrobial resistance genes in novel environmental strains of Klebsiella quasipneumoniae, including fosA, bla OKP, oqxB, oqxA, bla SHV−1, bla OXA−1, aac(6')-Ib-cr, catB, and aph(3”)-Ia, which confer resistance to various antibiotics such as fosfomycin, beta-lactams, aminoglycosides, and chloramphenicol.
A novel approach for combining the metagenome, metaresistome, metareplicome and causal inference to determine the microbes and their antibiotic resistance gene repertoire that contribute to dysbiosis.
The study identifies specific antibacterial resistance (ABR) genes that may contribute to exponential cell division in the presence of antibiotics for various pathogens, including Klebsiella pneumoniae, Citrobacter freundii, Staphylococcus epidermidis, Veillonella parvula, and Clostridium perfringens.
In silico analyses of diversity and dissemination of antimicrobial resistance genes and mobile genetics elements, for plasmids of enteric pathogens.
The study identifies a diverse array of antimicrobial resistance (AMR) genes across various plasmid replicon types in enteric pathogens, highlighting the prevalence of resistance genes in plasmids such as IncHI2, IncN, IncA/C, IncP, IncHI1, and IncFIA. Key AMR genes include aac(3)-IId, aac(3)-IIg, aac(6')-Ib3, aadA1, aadA5, aph(3'')-Ib, bla CMY-2, bla CTX-M-27, bla NDM-1, mcr-9.1, and others, which confer resistance to antibiotics such as gentamicin, cephalosporins, carbapenems, colistin, and tetracycline.
Silver nanoparticles enhance the efficacy of aminoglycosides against antibiotic-resistant bacteria.
The study identifies several AMR genes, including mcr-1, mcr-3, mcr-4, aadA5, catA1, bla CMY-2, bla CTX-M-55, dfrA17, fosA, mph(A), rmtB, strA, strB, sul1, sul2, bla TEM-1B, and bla CMY-48, which confer resistance to various antibiotics in different bacterial strains.
Epidemiology and Genetic Characteristics of Carbapenem-Resistant Escherichia coli in Chinese Intensive Care Unit Analyzed by Whole-Genome Sequencing: a Prospective Observational Study.
The study identified bla KPC-2 and bla NDM-5 as the main carbapenem resistance genes in carbapenem-resistant Escherichia coli (CREC) isolates. Additionally, various other resistance genes were detected, including extended-spectrum beta-lactamases (CTX-M-14, CTX-M-15, CTX-M-27, CTX-M-3, OXA-1, OXA-10, TEM-1), aminoglycoside resistance genes (aac(3)-IId, aac(3)-Iva, aac(6′)-Ib-AKT, aac(6′)-Ib-D181Y, aadA1, aadA2, aadA5, aph(3″)-Ib, aph(3′)-Ia, aph(4)-Ia, aph(6)-Id), quinolone resistance genes (qnrS1, qnrS2), tetracycline resistance genes (oqxA10, oqxB17), fosfomycin resistance gene (fosA3), and chloramphenicol resistance genes (cmlA1, cmlA5).
The under investigated facet of the COVID-19 pandemic: Molecular analysis of secondary bacterial infections at a COVID dedicated intensive care unit within a tertiary care center in Lebanon.
The study identified multiple AMR genes including bla CTX-M-15, bla TEM-1 B, bla SHV-26, bla CMY-145, bla OXA-1, bla NDM-5, bla NDM-7, aph(3")-Ib, aac(6')-Ib-cr, aadA, FosA, FosA3, FosA6, mcr-1.26, acrAB-TolC, and MexAB-OprM in Gram-negative isolates from COVID-19 patients. These genes conferred resistance to various antibiotics such as carbapenems, cephalosporins, fluoroquinolones, aminoglycosides, fosfomycin, and colistin.
The under investigated facet of the COVID-19 pandemic: Molecular analysis of secondary bacterial infections at a COVID dedicated intensive care unit within a tertiary care center in Lebanon.
The study identified multiple AMR genes including bla CTX-M-15, bla TEM-1 B, bla SHV-26, bla CMY-145, bla OXA-1, bla NDM-5, bla NDM-7, aph(3")-Ib, aac(6')-Ib-cr, aadA, FosA, FosA3, FosA6, mcr-1.26, acrAB-TolC, and MexAB-OprM in Gram-negative isolates from COVID-19 patients. These genes conferred resistance to various antibiotics such as carbapenems, cephalosporins, fluoroquinolones, aminoglycosides, fosfomycin, and colistin.
The under investigated facet of the COVID-19 pandemic: Molecular analysis of secondary bacterial infections at a COVID dedicated intensive care unit within a tertiary care center in Lebanon.
The study identified multiple AMR genes including bla CTX-M-15, bla TEM-1 B, bla SHV-26, bla CMY-145, bla OXA-1, bla NDM-5, bla NDM-7, aph(3")-Ib, aac(6')-Ib-cr, aadA, FosA, FosA3, FosA6, mcr-1.26, acrAB-TolC, and MexAB-OprM in Gram-negative isolates from COVID-19 patients. These genes conferred resistance to various antibiotics such as carbapenems, cephalosporins, fluoroquinolones, aminoglycosides, fosfomycin, and colistin.
Whole-Genome Sequencing Snapshot of Clinically Relevant Carbapenem-Resistant Gram-Negative Bacteria from Wastewater in Serbia.
The study identified several AMR genes and mutations in carbapenem-resistant Gram-negative bacteria from wastewater in Serbia, highlighting the presence of multidrug-resistant isolates with resistance to various antibiotics, including carbapenems, aminoglycosides, fluoroquinolones, and colistin.
Characterization of Extensively Drug-Resistant Salmonella enterica Serovar Kentucky Sequence Type 198 Isolates from Chicken Meat Products in Xuancheng, China.
Extensively drug-resistant Salmonella enterica serovar Kentucky ST198 isolates from chicken meat products in Xuancheng, China, were characterized. These isolates carried multiple resistance genes, including bla CTX-M-55, bla TEM-1B, aac(3)-IId, aadA17, rmtB, tet(A), floR, lnu(F), arr-2, qnrS1, sul1, mph(A), and fosA3, and mutations in gyrA (S83F, D87N) and parC (S80I), leading to resistance against several antimicrobial agents.
Analysis of Antimicrobial Resistance Genes (ARGs) in Enterobacterales and A. baumannii Clinical Strains Colonizing a Single Italian Patient.
The study identified various antimicrobial resistance genes in Enterobacterales and A. baumannii clinical strains from a single patient, highlighting the presence of blaNDM-1, qnrS1, aadA1, strA-strB, sul2, tet(J), catA1, blaACT-15, blaTEM-1B, dfrA14, oqxB, fosA, blaLEN-22, blaOXA-23, blaADC-25, blaOXA-66, armA, mph(E), msr(E), and tetB, indicating multidrug resistance and potential for horizontal gene transfer.
Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation.
The study identified multiple AMR genes and efflux pump systems in P. aeruginosa persister isolates, highlighting their multidrug-resistant phenotype and biofilm-forming capabilities.
Mobile genetic elements drive the multidrug resistance and spread of Salmonella serotypes along a poultry meat production line.
The study identifies multiple antimicrobial resistance genes in Salmonella isolates from a poultry production line, highlighting the role of mobile genetic elements in the spread of multidrug resistance.
The temporal dynamics of antimicrobial-resistant Salmonella enterica and predominant serovars in China.
The study identifies multiple antimicrobial resistance genes in Salmonella enterica isolates from China, highlighting the increasing prevalence of resistance to beta-lactams, quinolones, tetracyclines, and sulfonamides. Key genes include blaTEM-1B, blaCTX-M-14, aac(3)-IV, and mcr-1.
Prevalence and Genomic Characteristics of mcr-Positive Escherichia coli Strains Isolated from Humans, Pigs, and Foods in China.
The study identified mcr-1 as a major gene conferring colistin resistance in Escherichia coli isolates from humans, pigs, and foods in China. Additionally, several other resistance genes such as tet(A), floR, sul2, aadA1, strA, strB, blaCTX-M-14, fosA, lnu(F), and arr-3 were found to confer resistance to various antibiotics.
Dissemination of Pseudomonas aeruginosa bla(NDM-1)-Positive ST308 Clone in Singapore.
The study identifies multiple antibiotic resistance genes (ARGs) in bla NDM-1 -positive P. aeruginosa ST308 isolates, including aac(3)-Id, aac(6′)-Il, aph(3′)-Iib, bla OXA-488, bla NDM-1, bla PDC-19a, catB7, crpP, fosA, msr(E), qnrVC1, sul2, dfrB5, floR, aadA6, aadA11, and aph(3″)-Ib. These genes confer resistance to various antibiotics such as aminoglycosides, beta-lactams, carbapenems, cephalosporins, chloramphenicol, fluoroquinolones, fosfomycin, macrolides, quinolones, sulfonamides, trimethoprim, and streptomycin.
Epidemiological and Genetic Characteristics of Clinical Carbapenem-Resistant Pseudomonas aeruginosa Strains in Guangdong Province, China.
The study identified blaIMP-45 as a major determinant of meropenem resistance in P. aeruginosa, and mutations in oprD, mexR, nalD, and armR were associated with meropenem resistance.
Genomic and functional characterization of carbapenem-resistant Klebsiella pneumoniae from hospital wastewater.
The study identified the bla KPC-2 gene as a major contributor to carbapenem resistance in Klebsiella pneumoniae isolates from hospital wastewater, demonstrating its successful in vitro transfer through conjugation.
Polyclonal Spread of Fosfomycin Resistance among Carbapenemase-Producing Members of the Enterobacterales in the Czech Republic.
The study identified fosA10 and fosA7.9 as novel fosfomycin resistance genes in carbapenemase-producing Enterobacterales in the Czech Republic. Mutations in glpT, glpR, cyaA, and uhpc were associated with decreased fosfomycin susceptibility.
Plasmid-mediated colistin resistance among human clinical Enterobacterales isolates: national surveillance in the Czech Republic.
The study identified mcr-1, mcr-4, and mcr-9 genes in colistin-resistant Enterobacterales isolates from the Czech Republic, highlighting their association with plasmid-mediated resistance and multidrug resistance features.
Molecular Characterization of the Convergent Carbapenem-Resistant and Hypervirulent Klebsiella pneumoniae Strain K1-ST23, Collected in Chile during the COVID-19 Pandemic.
The study identified carbapenem-resistant hypervirulent Klebsiella pneumoniae strain K-2157, which harbors multiple AMR genes including blaSHV-190, blaTEM-1, blaOXA-9, blaKPC-2, fosA, oqxA, and oqxB, along with virulence-associated plasmids and an integrative and conjugative element (ICE).
Fosfomycin Resistance in Bacteria Isolated from Companion Animals (Dogs and Cats).
The study identifies fosA, fosA3, fosB, murA, and glpT as genes conferring fosfomycin resistance in bacteria isolated from companion animals. These genes were experimentally validated in various bacterial species, highlighting the spread of fosfomycin resistance among multidrug-resistant bacteria in pets.
Fosfomycin Resistance in Bacteria Isolated from Companion Animals (Dogs and Cats).
The study identifies fosA, fosA3, fosB, murA, and glpT as genes conferring fosfomycin resistance in bacteria isolated from companion animals. These genes were experimentally validated in various bacterial species, highlighting the spread of fosfomycin resistance among multidrug-resistant bacteria in pets.
Case report: A successfully treated case of community-acquired urinary tract infection due to Klebsiella aerogenes in Bangladesh.
The study identifies several AMR genes in a multidrug-resistant Klebsiella aerogenes strain, including genes conferring resistance to aminoglycosides, beta-lactams, fluoroquinolones, and others. The strain was found to be susceptible to carbapenems and polymyxins.
Expansion of healthcare-associated hypervirulent KPC-2-producing Klebsiella pneumoniae ST11/KL64 beyond hospital settings.
Two carbapenem-resistant K. pneumoniae strains (PINH-4250 and PINH-4900) were recovered from the Pinheiros River, carrying the blaKPC-2 carbapenemase gene and other resistance determinants. They exhibited a broad resistome and hypervirulent behavior.
High incidence of fosfomycin-resistant uropathogenic E. coli among children.
The study identified several plasmid-mediated fosfomycin-resistant genes, including fosA, fosA3, fosA4, fosA5, and fosC2, in fosfomycin-resistant uropathogenic E. coli isolates from children. These genes were found to confer resistance to fosfomycin.
High incidence of fosfomycin-resistant uropathogenic E. coli among children.
The study identified several plasmid-mediated fosfomycin-resistant genes, including fosA, fosA3, fosA4, fosA5, and fosC2, in fosfomycin-resistant uropathogenic E. coli isolates from children. These genes were found to confer resistance to fosfomycin.
High incidence of fosfomycin-resistant uropathogenic E. coli among children.
The study identified several plasmid-mediated fosfomycin-resistant genes, including fosA, fosA3, fosA4, fosA5, and fosC2, in fosfomycin-resistant uropathogenic E. coli isolates from children. These genes were found to confer resistance to fosfomycin.
High incidence of fosfomycin-resistant uropathogenic E. coli among children.
The study identified several plasmid-mediated fosfomycin-resistant genes, including fosA, fosA3, fosA4, fosA5, and fosC2, in fosfomycin-resistant uropathogenic E. coli isolates from children. These genes were found to confer resistance to fosfomycin.
The emergence of multi-drug resistant and virulence gene carrying Escherichia coli strains in the dairy environment: a rising threat to the environment, animal, and public health.
The study identified multidrug-resistant Escherichia coli strains carrying various antibiotic resistance genes (ARGs) and virulence-associated genes (VAGs) in the dairy environment, highlighting the potential threat to human, animal, and environmental health.
Pre-existing heterogeneity facilitates development of heteroresistance upon gene acquisition.
The study identifies the fosA gene as a key factor in the development of fosfomycin heteroresistance, showing that its presence increases the MIC of a subpopulation beyond the clinical breakpoint, leading to heteroresistance. Deletion of fosA resulted in heterosusceptibility, indicating that the gene's presence is crucial for the transition from heterosusceptibility to heteroresistance.
Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
The study identified various AMR genes in multidrug-resistant Gram-negative pathogens, highlighting the prevalence of bla CTX-M-15, bla CMY-42, bla NDM-5, aadA, bla TEM-1B, bla OXA-232, bla NDM-1, rmtB, rmtC, bla VEB, bla VIM-2, aph(3'), strA/B, bla OXA-23, aph (3′), catB, dfrB, bla VIM-2, fosA, oqxA, oqxB, bla OXA-23, bla CARB, bla OXA-91, bla OXA-51, bla PAO, bla SHV, aph (3′)-Ib, aph (6)-Id, mphE, msrE, ermB, mphA, aadA, rmtB, qnrB, dfrA, sul1, sul2, and fosA7.
Poultry production as the main reservoir of ciprofloxacin- and tigecycline-resistant extended-spectrum β-lactamase (ESBL)-producing Salmonella enterica serovar Kentucky ST198.2-2 causing human infections in China.
The study identifies several AMR genes and mutations in Salmonella enterica serovar Kentucky ST198.2-2, including blaCTX-M-14b, blaCTX-M-55, blaTEM-1B, aadA7, aph(3')-Ia, aac(3)-IId, rmtB, tet(A), sul1, dfrA14, floR, lnu(F), mph(A), arr-2, and fosA3, which confer resistance to various antibiotics. Mutations in gyrA and parC also contribute to fluoroquinolone resistance.
Outbreak of OXA-232-producing carbapenem-resistant Klebsiella pneumoniae ST15 in a Chinese teaching hospital: a molecular epidemiological study.
The study identified the presence of multiple AMR genes, including blaOXA-232, blaCTX-M-15, blaSHV-28, fosA, oqxA, oqxB, tet(E), AAC(6')-Ib, APH(3'')-Ib, APH(6)-Id, TEM-1, sul2, QnrB17, QnrB1, dfrA14, arr-2, AAC(6')-Ib9, and rmtF, in OXA-232-producing CRKP isolates from a hospital outbreak in China.
Genomic characterization of colistin-resistant Klebsiella pneumoniae isolated from intensive care unit patients in Egypt.
The study identifies mcr-1.1 as a plasmid-mediated colistin resistance gene and characterizes several chromosomal mutations in mgrB, arnT, pmrA, pmrB, pmrC, phoQ, and arnB that contribute to colistin resistance in K. pneumoniae isolates from Egypt.
The origin and evolution of IncF33 plasmids based on large-scale data sets.
The study identifies several clinically important antibiotic resistance genes carried by IncF33 plasmids, including bla CTX-M-55, bla CTX-M-65, fosA3, rmtB, aph(3'')-Ib, aph(6)-Id, aph(3')-IIa, floR, oqxAB, tet(A), and sul2. These genes contribute to multidrug resistance in Enterobacterales, particularly in Escherichia coli, Salmonella, and Klebsiella pneumoniae.
Antibiotic Resistance Mediated by Escherichia coli in Kuwait Marine Environment as Revealed through Genomic Analysis.
The study identified various antibiotic resistance genes in Escherichia coli isolates from Kuwait's marine environment, including beta-lactamases, aminoglycoside-modifying enzymes, fluoroquinolone resistance genes, sulfonamide resistance genes, tetracycline resistance genes, and macrolide resistance genes. Additionally, the MFS-type drug efflux gene mdfA was commonly found in E. coli isolates.
Polyclonal Multidrug ESBL-Producing Klebsiella pneumoniae and Emergence of Susceptible Hypervirulent Klebsiella pneumoniae ST23 Isolates in Mozambique.
The study identified multiple AMR genes in Klebsiella isolates, including bla CTX-M-15, bla TEM-1, bla SHV, and bla OXA-1, which confer resistance to beta-lactams. Other genes like aac(3)-IIa, aac(6')-Ib-cr, qnrB1, qnrB6, catA1, catA2, catB3, dfrA5, dfrA7, dfrA12, dfrA14, dfrA27, sul1, sul2, mph(A), tet(A), tet(D), fosA, ARR-3, and oqxAB were also found, contributing to resistance against aminoglycosides, quinolones, chloramphenicol, trimethoprim, sulfamethoxazole, macrolides, tetracycline, fosfomycin, rifampicin, and quinolones respectively. Mutations in ompK36, ompK37, and acrR were associated with resistance to cephalosporins and fluoroquinolones, while mutations in RamR were linked to tigecycline resistance.
First Detection and Molecular Characterization of Pseudomonas aeruginosa bla(NDM-1) ST308 in Greece.
The study reports the first detection of blaNDM-1-positive Pseudomonas aeruginosa ST308 in Greece, highlighting the presence of multiple resistance genes including blaNDM-1, blaPAO, blaOXA-10, blaOXA-488, and others, indicating multidrug resistance.
Uropathogenic Escherichia coli (UPEC)-Associated Urinary Tract Infections: The Molecular Basis for Challenges to Effective Treatment.
This review discusses the molecular basis of challenges to effective treatment of UPEC-associated urinary tract infections, focusing on virulence factors and antibiotic resistance mechanisms.
Molecular characterization of highly prevalent Escherichia coli and Escherichia marmotae resistant to extended-spectrum cephalosporins in European starlings (Sturnus vulgaris) in Tunisia.
The study identified several extended-spectrum beta-lactamase (ESBL) and AmpC resistance genes, including bla CTX-M-14, bla CTX-M-15, bla CTX-M-27, bla CTX-M-1, bla CMY-2, and bla CMY-62, in Escherichia coli and Escherichia marmotae isolates from European starlings in Tunisia. Additionally, aminoglycoside resistance genes such as aph(6)-Id and aph(3″)-Ib, along with fosA3, sul1, sul2, sul3, drfA1, drfA17, tet(A), and qnrS1 were also characterized.
Domestically Acquired NDM-1-Producing Pseudomonas aeruginosa, Southern California, USA, 2023
The study reports a case of domestically acquired NDM-1-producing Pseudomonas aeruginosa in a transplant patient in southern California, highlighting the presence of multiple resistance genes including blaNDM-1, blaOXA-10, blaOXA-488, blaPDC-35, blaPME-1, aac(6')-Ib9, ant(3”)-IIa, aph(3′)-IIb, aph(3′)-VIa, catB3, catB7, cmlA9, fosA, tet(D), and sul1.
Comparative Genomic Analysis Reveals the Emergence of ST-231 and ST-395 Klebsiella pneumoniae Strains Associated with the High Transmissibility of bla(KPC) Plasmids.
The study identifies multiple AMR genes, including blaOXA-232, blaCTX-M-15, dfrA14, aac(6')-Ib-cr, and others, in K. pneumoniae isolates, highlighting the role of integrons and plasmids in the dissemination of resistance.
Phenotypic and genomic characterization of Pseudomonas aeruginosa isolates recovered from catheter-associated urinary tract infections in an Egyptian hospital.
The study identified multiple AMR genes and mutations in Pseudomonas aeruginosa isolates from catheter-associated urinary tract infections in Egypt, including beta-lactamases, aminoglycoside-modifying enzymes, quinolone resistance proteins, and efflux pump systems. Additionally, a pBT2436-like megaplasmid was detected, which contributes to multidrug resistance.
Unveiling the genome of a high-risk pandrug-resistant Klebsiella pneumoniae emerging in the Brazilian Amazon Region, 2022.
The study identified a pandrug-resistant Klebsiella pneumoniae strain (Kp196) with a complex resistome comprising numerous acquired and intrinsic resistance mechanisms, including multiple beta-lactamases, aminoglycoside-modifying enzymes, quinolone resistance proteins, and mutations in genes involved in colistin, tigecycline, and fluoroquinolone resistance.
Predicting Human Risk with Multidrug Resistant Enterobacter hormaechei MS2 having MCR 9 Gene Isolated from the Feces of Healthy Broiler Through Whole-Genome Sequence-Based Analysis.
The study identifies the MCR-9, FosA2, and ACT-69 genes in Enterobacter hormaechei MS2, highlighting its multidrug resistance and zoonotic potential.
Bacannot: A Comprehensive Pipeline for Bacterial Genomics Analysis Including Antimicrobial Resistance and Virulence Gene Annotation
The study identifies intrinsic resistance genes blaSHV-1, fosA, and oqxAB in the Klebsiella pneumoniae strain KpBSB53, along with potential mutations in acrR, ompK36, and ompK37 that may contribute to resistance.
Genomic characterization of tigecycline-resistant Escherichia coli and Klebsiella pneumoniae isolates from hospital sewage.
The study identifies tet(X4) and tmexCD1-toprJ1 as key genes contributing to tigecycline resistance in E. coli and K. pneumoniae isolates from hospital sewage, highlighting the role of plasmid-mediated resistance and efflux pump overexpression.
Genomic characterization of tigecycline-resistant Escherichia coli and Klebsiella pneumoniae isolates from hospital sewage.
The study identifies tet(X4) and tmexCD1-toprJ1 as key genes contributing to tigecycline resistance in E. coli and K. pneumoniae isolates from hospital sewage, highlighting the role of plasmid-mediated resistance and efflux pump overexpression.
Exploring clonality and virulence gene associations in bloodstream infections using whole-genome sequencing and clinical data.
The study identified several AMR genes, including fosA, oqxA, and emrD, which were prevalent in Enterobacterales and Pseudomonas aeruginosa. These genes contribute to resistance against fosfomycin, quinolones, and multiple antibiotics, respectively.
Deciphering the Role of WWTPs in Cold Environments as Hotspots for the Dissemination of Antibiotic Resistance Genes.
The study identified several antibiotic resistance genes (ARGs) in wastewater treatment plants (WWTPs) in cold environments, highlighting their role as hotspots for the dissemination of ARGs. Key genes included aadA, aadB, ampC, blaSHV, blaTEM, dfrA1, ermB, fosA, qnrS, and tetA(A).
Within-host genetic diversity of extended-spectrum beta-lactamase-producing Enterobacterales in long-term colonized patients.
The study characterizes various AMR genes, including bla CTX-M-15, bla TEM-1B, bla OXA-1, qnrB1, qnrS1, aph(6)-Id, aph(3”)-Ib, aac(3)-IIa, ant(3”)-Ia, dfrA14, dfrA1, aac(6’)-Ib-cr, tet(A), tet(D), sul2, sul1, fosA6, fosA_5, fosA_3, bla CTX-M-1, bla CTX-M-14, bla CTX-M-14b, bla CTX-M-8, bla CMY-2, bla TEM-190, aac(3)-IVa, aph(4)-Ia, and catB3_2, in ESBL-producing Enterobacterales isolates from long-term colonized patients.
Serovars, Virulence and Antimicrobial Resistance Genes of Non-Typhoidal Salmonella Strains from Dairy Systems in Mexico.
An insight into genes responsible for fosfomycin resistance among uropathogens of asymptomatic bacteriuria during pregnancy: A North Indian study.
The study identified murA, glpT, and fosA genes as contributors to fosfomycin resistance in uropathogens causing asymptomatic bacteriuria during pregnancy.
Prevalence, antibiotic resistance and molecular characterization of Staphylococcus aureus in ready-to-eat fruits and vegetables in Shanghai, China.
The study identified several antibiotic resistance genes in Staphylococcus aureus isolates from ready-to-eat fruits and vegetables in Shanghai, China, including genes conferring resistance to beta-lactams, fluoroquinolones, aminoglycosides, lincosamides, and fosfomycin.
In vitro susceptibility to fosfomycin in clinical and environmental extended-spectrum beta-lactamase producing and/or ciprofloxacin-non-susceptible Escherichia coli isolates.
The study identified fosA3 as a gene responsible for fosfomycin resistance in E. coli isolates from both clinical and environmental sources.
Next generation antibiotic combinations to combat pan-drug resistant Klebsiella pneumoniae.
The study identified multiple AMR genes in the pan-drug resistant K. pneumoniae isolate CDC Nevada, including beta-lactamases (bla NDM-1, bla CMY-6, bla CTX-M-15, bla SHV-2), fosfomycin resistance gene (fosA), macrolide phosphotransferase (mphA), aminoglycoside acetyltransferase (aacA4), ribosome methyltransferase (rmtC), fluoroquinolone efflux pumps (oqxA, oqxB), and sulfonamide resistance gene (sul1).
ESKAPE in China: epidemiology and characteristics of antibiotic resistance.
The study characterizes various AMR genes and mutations in ESKAPE pathogens in China, highlighting the prevalence of carbapenem-resistant K. pneumoniae (CRKP) and the emergence of resistance mechanisms such as blaKPC-2, blaNDM-1, blaNDM-5, rmtB, armA, fosA3, optrA, and poxtA.
Bacteriological and molecular study of fosfomycin resistance in uropathogenic Escherichia coli.
The study identified the genes murA, glpT, cyaA, fosA3, and fosA4 as associated with fosfomycin resistance in uropathogenic Escherichia coli (UPEC). These genes were detected in both chromosomal and plasmid contexts, highlighting their role in resistance mechanisms.
Bacteriological and molecular study of fosfomycin resistance in uropathogenic Escherichia coli.
The study identified the genes murA, glpT, cyaA, fosA3, and fosA4 as associated with fosfomycin resistance in uropathogenic Escherichia coli (UPEC). These genes were detected in both chromosomal and plasmid contexts, highlighting their role in resistance mechanisms.
Whole genome sequence-based molecular characterization of blood isolates of carbapenem-resistant Enterobacter cloacae complex from ICU patients in Kolkata, India, during 2017-2022: emergence of phylogenetically heterogeneous Enterobacter hormaechei subsp. xiangfangensis.
The study identified several carbapenemase and extended-spectrum beta-lactamase genes, including bla NDM-1, bla NDM-4, bla NDM-5, bla NDM-7, bla OXA-181, bla OXA-232, bla KPC-3, bla CTX-M-15, bla SFO-1, bla ACT, and bla CMH-3, in carbapenem-resistant Enterobacter cloacae complex isolates from Kolkata, India. Novel integrons (In180, In4874, In4887, and In4888) were also discovered.
Adaptive evolution of plasmid and chromosome contributes to the fitness of a blaNDM-bearing cointegrate plasmid in Escherichia coli.
The study identifies the role of sspA mutation in improving bacterial fitness, biofilm formation, and gut colonization ability, and highlights the importance of psiB in plasmid horizontal transferability.
Characterization of a hemolytic and antibiotic-resistant Pseudomonas aeruginosa strain S3 pathogenic to fish isolated from Mahananda River in India.
The study identified multiple antibiotic resistance genes in Pseudomonas aeruginosa strain S3, including beta-lactamases, fosfomycin resistance gene fosA, aminoglycoside resistance gene aph, chloramphenicol resistance gene catB, and multiple efflux pump genes such as mexAB-oprM, mexCD-oprJ, mexEF-oprN, mexXY, mexVW-oprM, mexJK-oprM, mexHI-opmD, mexPQ-opmE, acrAB-tolC, oqxAB, and mcr. Additionally, hemolysin genes like plcH, choE, and papA were also identified.
Klebsiella pneumoniae sequence type 147: a high-risk clone increasingly associated with plasmids carrying both resistance and virulence elements.
The study identified various AMR genes and mutations in Klebsiella pneumoniae ST147 isolates, including bla NDM-5, bla NDM-1, bla OXA-181, bla OXA-232, bla OXA-48, aadA1, aph(3')-VI, bla CTX-M-15, bla TEM-1B/C, bla OXA-9, truncated catA1, qnrS1, sul1, dfrA5, mph(A), erm(B), aac(6')-Ib, aac(6')-Ib3, sul2, aph(3')-Ia, rmtB, fosA, oqxAB, bla SHV-11/67, arr-3, and catB3.
A review of the mechanisms that confer antibiotic resistance in pathotypes of E. coli.
The review discusses the mechanisms of antibiotic resistance in pathotypes of E. coli, focusing on the role of beta-lactamases, carbapenemases, and other resistance genes. It highlights the importance of understanding these mechanisms to combat the growing problem of antibiotic resistance.
Prevalence and genomic-based antimicrobial resistance analysis of Avibacterium paragallinarum isolates in Guangdong Province, China.
The study identified multiple antimicrobial resistance genes in Avibacterium paragallinarum isolates from Guangdong, China, including tet(B), aph(3')-Ia, aph(3'')-Ib, aph(6)-Id, aad-A, sul2, sul3, catP, floR, blaOXA-1, blaCTX-M-14, erm(X), mef(B), and fosA3. These genes were associated with resistance to tetracycline, streptomycin, kanamycin, trimethoprim-sulfamethoxazole, chloramphenicol, ampicillin, erythromycin, and fosfomycin.
Assessment of three antibiotic combination regimens against Gram-negative bacteria causing neonatal sepsis in low- and middle-income countries.
The study identifies multiple AMR genes and mutations in Gram-negative bacteria causing neonatal sepsis in LMICs, including ESBLs, carbapenemases, and aminoglycoside-modifying enzymes, highlighting the high prevalence of multidrug resistance and the need for effective antibiotic combinations.
Assessment of three antibiotic combination regimens against Gram-negative bacteria causing neonatal sepsis in low- and middle-income countries.
The study identifies multiple AMR genes and mutations in Gram-negative bacteria causing neonatal sepsis in LMICs, including ESBLs, carbapenemases, and aminoglycoside-modifying enzymes, highlighting the high prevalence of multidrug resistance and the need for effective antibiotic combinations.
Antimicrobial resistance and population genomics of emerging multidrug-resistant Salmonella 4,[5],12:i:- in Guangdong, China.
The study identified multiple AMR genes and mutations in Salmonella 4,[5],12:i:- isolates from Guangdong, China, including gyrA mutations, PMQR genes, and various beta-lactamase genes, contributing to multidrug resistance.
Design and Validation of Primer Sets for the Detection and Quantification of Antibiotic Resistance Genes in Environmental Samples by Quantitative PCR.
The study presents eleven novel primer sets for the detection and quantification of antibiotic resistance genes (ARGs) in environmental samples using qPCR. These primers target genes such as aadA, aadB, ampC, blaTEM, blaSHV, dfrA1, ermB, fosA, mecA, qnrS, and tetA(A), which are responsible for resistance to various antibiotics including aminoglycosides, beta-lactams, trimethoprim, macrolides, fosfomycin, quinolones, and tetracyclines.
Genetic Characteristics of Novel Inc(pSE5381-aadB) Plasmids, Integrative and Mobilizable Elements, and Integrative and Conjugative Elements in Pseudomonas aeruginosa.
The study identifies three novel bla OXA variants (bla OXA-1202, bla OXA-1203, and bla OXA-1204) in Pseudomonas aeruginosa, which confer resistance to beta-lactam antibiotics, including amoxicillin, ampicillin, ceftazidime, and cefoxitin.
Characterizing carbapenemase-producing Escherichia coli isolates from Spain: high genetic heterogeneity and wide geographical spread.
The study identifies various carbapenemase genes such as bla OXA-48, bla VIM-1, bla NDM-1, bla KPC-3, and bla NDM-5 in carbapenem-resistant E. coli isolates from Spain, highlighting their genetic diversity and geographic distribution.
Genomic characterization of carbapenem and colistin-resistant Klebsiella pneumoniae isolates from humans and dogs.
The study characterized carbapenem and colistin-resistant Klebsiella pneumoniae isolates from humans and dogs in Thailand, identifying multiple beta-lactamase genes, fosfomycin resistance genes, quinolone resistance genes, and the mcr-3.5 gene for colistin resistance.
Genomic characterization of carbapenem and colistin-resistant Klebsiella pneumoniae isolates from humans and dogs.
The study characterized carbapenem and colistin-resistant Klebsiella pneumoniae isolates from humans and dogs in Thailand, identifying multiple beta-lactamase genes, fosfomycin resistance genes, quinolone resistance genes, and the mcr-3.5 gene for colistin resistance.
Genomic characterisation of Escherichia coli isolated from poultry at retail through Sink Surveillance in Dhaka, Bangladesh reveals high levels of multi-drug resistance.
The study identified multiple AMR genes in E. coli isolates from poultry in Bangladesh, including genes conferring resistance to various antibiotics such as tetracycline, ciprofloxacin, azithromycin, colistin, and others. High levels of multidrug resistance were observed, with specific genes like mcr1.1, bla CTX-M-65, and tet(A) playing significant roles.
Whole-Genome Analysis of Extensively Drug-Resistant Enterobacter hormaechei Isolated from a Patient with Non-Hodgkin's Lymphoma.
The study identifies an extensively drug-resistant Enterobacter hormaechei ST90 clone carrying multiple resistance genes, including bla CTX-M-15, bla GES-2, bla TEM-1A, bla OXA-1, bla NDM-1, and bla ACT-15, along with genes encoding resistance to aminoglycosides, quinolones, sulfonamides, chloramphenicol, fosfomycin, and other antibiotics.
Unveiling the microevolution of antimicrobial resistance in selected Pseudomonas aeruginosa isolates from Egyptian healthcare settings: A genomic approach.
The study identified multiple antimicrobial resistance genes and mutations in Pseudomonas aeruginosa isolates from Egyptian healthcare settings, highlighting extensive drug resistance and the role of mobile genetic elements in the spread of resistance.
Pathogenomics analysis of high-risk clone ST147 multidrug-resistant Klebsiella pneumoniae isolated from a patient in Egypt.
The study identifies multiple AMR genes in the MDR-KP isolate WSF99, including various beta-lactamases, carbapenemase, aminoglycoside modifying enzymes, fluoroquinolone resistance genes, and others, highlighting the complex resistance profile of this high-risk clone.
Genomic analysis of carbapenem- and colistin-resistant Klebsiella pneumoniae complex harbouring mcr-8 and mcr-9 from individuals in Thailand.
The study identifies mcr-8 and mcr-9 genes in carbapenem-resistant Klebsiella pneumoniae complex isolates from Thailand, highlighting their role in colistin resistance. It also characterizes additional AMR genes such as bla NDM-1, bla IMP-14, and various other resistance determinants.
Genomic Evaluation of Multidrug-Resistant Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli from Irrigation Water and Fresh Produce in South Africa: A Cross-Sectional Analysis.
The study identified several AMR genes in multidrug-resistant ESBL-producing E. coli isolates from irrigation water and fresh produce in South Africa, including bla CTX-M-1, bla CTX-M-14, bla CTX-M-15, aph(6)-Id, ant(3″)-Ia, aadA2, aph(3″)-Ib, sul2, sul3, dfrA1, fosA3, cmlA1, and floR.
Tracing the origin of NDM-1-producing and extensively drug-resistant Pseudomonas aeruginosa ST357 in the Netherlands.
The study identifies the NDM-1-producing Pseudomonas aeruginosa ST357 as an extensively drug-resistant strain with a unique resistome, highlighting the importance of tracking the origin of such isolates through genomic epidemiology.
Relationship between virulence and carbapenem resistance phenotype of Klebsiella pneumoniae from blood infection: identification of a carbapenem-resistant and hypervirulent strain.
The study identified a carbapenem-resistant and hypervirulent Klebsiella pneumoniae strain (CR-HVKP) carrying various resistance genes including bla KPC-2, bla SHV-145, bla TEM-1, bla CTX-M-3, fosA6, oqxA5, oqxB26, and aac(3)-IId. This strain also exhibited high virulence characteristics such as biofilm formation and serum resistance.
An in-depth study on survival mechanism of bacterial isolates in disinfectants within the hospital environment.
The study identified multiple AMR genes, including blaDIM-1, qacE, and various efflux pump genes, in bacterial isolates from hospital disinfectants, indicating their adaptation to survive in disinfectant environments.
Escherichia coli ST117: exploring the zoonotic hypothesis.
The study identified several AMR genes in E. coli ST117 isolates from Brazilian poultry outbreaks, including bla CTX-M-55, bla CTX-M-8, bla TEM-1, mcr-1.1, and fosA3, which confer resistance to cephalosporins, penicillins, colistin, and fosfomycin.
FosA3 emerging in clinical carbapenemase-producing C. freundii.
The study reports the first case of FosA3 production in clinical carbapenemase-producing C. freundii ST116, highlighting the emergence of fosA3 in low-risk pathogens and its potential impact on antimicrobial resistance.
Molecular characterization, virulence and antimicrobial and biocidal susceptibility of selected bacteria isolated from the cloaca of nestling ospreys (Pandion haliaetus) from Mono Lake, California, USA.
The study identified several AMR genes and mutations in bacteria isolated from the cloaca of nestling ospreys, including bla CTX-M-55, bla EC, tet (A), floR, sul3, dfrA14, aac(3)-IIa, ampC, fosA5, sal (A), blaZ, tet (M), and pbp5. Mutations in gyrA, parC, parE, ompK36, ompK37, rpoB, and pbp5 were also detected, contributing to resistance against various antibiotics.
Genomic Insights into Vietnamese Extended-Spectrum β-Lactamase-9-Producing Extensively Drug-Resistant Pseudomonas aeruginosa Isolates Belonging to the High-Risk Clone ST357 Obtained from Bulgarian Intensive Care Unit Patients.
The study identified multiple AMR genes, including blaVEB-9, blaPDC-3, blaOXA-10, blaOXA-50, and others, in two extensively drug-resistant Pseudomonas aeruginosa isolates from Bulgaria. These genes conferred resistance to various antibiotics, including β-lactams, aminoglycosides, and fluoroquinolones.
Whole-genome sequencing of Klebsiella pneumoniae MDR circulating in a pediatric hospital setting: a comprehensive genome analysis of isolates from Guayaquil, Ecuador.
The study identified several AMR genes and mutations in K. pneumoniae isolates from Ecuador, including bla KPC-3, bla OXA-9, aadA1, aac(6')-Ib-AKT, and mutations in ompK35, ompK36, ompK37, gyrA, parC, and acrR, contributing to resistance against beta-lactams, aminoglycosides, fluoroquinolones, and other antibiotics.
First report of carbapenems encoding multidrug-resistant gram-negative bacteria from a pediatric hospital in Gaza Strip, Palestine.
The study identified multiple carbapenem resistance genes, including bla KPC-2, bla PDC-36/12, and bla POM-1, in multidrug-resistant Gram-negative bacteria isolated from a pediatric hospital in the Gaza Strip. These genes were found in various bacterial species such as Escherichia coli and Klebsiella pneumoniae.
Evolution and maintenance of a large multidrug-resistant plasmid in a Salmonella enterica Typhimurium host under differing antibiotic selection pressures.
The study characterizes the evolution of a large multidrug-resistant plasmid (pJXP9) in Salmonella enterica Typhimurium under varying antibiotic selection pressures, identifying several AMR genes and mutations that contribute to resistance and plasmid maintenance.
Investigating the resistome of haemolytic bacteria in Arctic soils.
The study identified multiple AMR genes in Arctic haemolytic bacteria, including genes encoding efflux pumps and ribosomal protection proteins, indicating the presence of resistance mechanisms against various antibiotics.
Metagenome mining divulges virulent and multidrug resistant Pseudomonas aeruginosa ST242 and Klebsiella michiganensis ST∗1b23 coinfecting an 8-month-old meningitis infant under ICU in Kampala, Uganda, East Africa.
The study identified four acquired AMR genes (aph(3')-Ia, blaOXY-1, OqxA, and OqxB) and mutations in OmpK35 and OmpK36 associated with cephalosporin and carbapenem resistance in K. michiganensis RSM9152B-2.
Antimicrobial Resistance in Wastewater Samples from Kumasi, Ghana: A Genomic and Metagenomic Analysis
The study identified several AMR genes and mutations in P. aeruginosa and K. pneumoniae isolates from wastewater samples in Kumasi, Ghana, highlighting the presence of multidrug-resistant strains carrying genes such as blaCTX-M-15, blaOXA-488, and qnrVC1, along with mutations in gyrA and parC contributing to fluoroquinolone resistance.
Molecular Characterization of Pseudomonas aeruginosa Clinical Isolates Through Whole-Genome Sequencing: A Comprehensive Analysis of Biotypes, Sequence Types, and Antimicrobial and Virulence Genes.
The study identified multiple antibiotic resistance genes in Pseudomonas aeruginosa clinical isolates, including bla PDC, bla OXA, and bla VIM, which confer resistance to beta-lactams, as well as aac(6')-Il, aadA10, aph, and others that confer resistance to aminoglycosides. Additionally, genes like catB7, fosA, qnrVC1, and crpP were found to confer resistance to chloramphenicol, fosfomycin, quinolones, and fluoroquinolones, respectively.
Emergence of hypervirulent and carbapenem-resistant Klebsiella pneumoniae from 2014 - 2021 in Central and Eastern China: a molecular, biological, and epidemiological study.
The study identified blaKPC-2, blaNDM-5, blaOXA-232, qnrS, and fosA as the primary resistance genes in hypervirulent and carbapenem-resistant Klebsiella pneumoniae strains, highlighting their role in multidrug resistance.
Genomic characterisation of an extended-spectrum β-Lactamase-producing Klebsiella pneumoniae isolate assigned to a novel sequence type (6914).
The study reports the genomic characterization of an extended-spectrum β-Lactamase-producing Klebsiella pneumoniae isolate, Cow102, which exhibits multidrug resistance. It identifies several resistance genes, including blaSHV-1, blaSHV-11, blaSHV-13, blaSHV-26, blaSHV-70, blaSHV-78, blaSHV-98, blaSHV-145, blaTEM-1B, aadA2, catA2, catII, dfrA16, fosA, oqxA, oqxB, sul1, sul2, and tet(D).
Phenotypic and genomic characterization of ST11-K1 CR-hvKP with highly homologous bla(KPC-2)-bearing plasmids in China.
Seven ST11-K1 CR-hvKP isolates were found to carry highly homologous blaKPC-2-bearing plasmids, demonstrating multidrug resistance and hypervirulence. Key resistance genes included blaKPC-2, blaSHV-11, blaSHV-12, blaCTX-M-65, blaTEM-1, rmtB, oqxB, tetA/B, sul4, mcr-8, fosA, and mupB.
Comparative genomics analysis of Salmonella Enteritidis isolated from clinical cases associated with chicken.
Five Salmonella Enteritidis isolates were analyzed, revealing multiple antimicrobial resistance genes and chromosomal mutations. Key resistance genes included bla CTX−M−55, bla TEM−141, bla TEM−1B, aac(6')-Iaa, aph(3’)-IIa, aph(3’’)-Ib, aph(6)-Id, tet(A), floR, fosA3, and sul2. Chromosomal mutations in gyrA (D87G/D87Y) and acrB (F28L/L40P) were also identified, contributing to fluoroquinolone and multidrug resistance.
Multidrug-resistant ESBL-producing Klebsiella pneumoniae complex in Czech hospitals, wastewaters and surface waters.
The study identified multidrug-resistant Klebsiella pneumoniae complex isolates carrying various beta-lactamase genes such as bla CTX-M-15, bla GES-51, bla OXA-48, bla NDM-1, and bla KPC-3, along with other resistance genes like oqxA, oqxB, sul2, aph(6)-Id, dfr14, qnrB1, and aac(6')-Ib-cr.
Interrelation Between Pathoadaptability Factors and Crispr-Element Patterns in the Genomes of Escherichia coli Isolates Collected from Healthy Puerperant Women in Ural Region, Russia.
The study identified several AMR genes in E. coli isolates from healthy puerperant women, including beta-lactamases (bla CTX-M-15, bla TEM-1C, bla DHA-1, bla CTX-M-27, bla TEM-1B, bla OXA-1), aminoglycoside resistance genes (aadA5, dfrA17), and a fosfomycin resistance gene (fosA).
Genomic and phenotypic characterization of ST2012 clinical Klebsiella quasipneumoniae subsp. similipneumoniae harboring bla(NDM-1) in China.
The study identifies the presence of bla(NDM-1), bla(SHV-12), bla(OKP-B-2), oqxAB, and fosA in the clinical strain ACESH00366hy of Klebsiella quasipneumoniae subsp. similipneumoniae, highlighting its multidrug resistance profile.
The association between the genetic structures of commonly incompatible plasmids in Gram-negative bacteria, their distribution and the resistance genes.
The study characterizes various resistance genes carried by incompatible plasmids in Gram-negative bacteria, highlighting their role in the spread of antibiotic resistance. Key genes include beta-lactamases like bla VIM-1, bla SHV-12, bla TEM-1B, and bla CTX-M-15, as well as sulfonamide resistance genes sul1 and sul2, tetracycline resistance gene tetA, and polymyxin resistance gene mcr-1.
The Prevalence and the Underlying Mechanisms of Fosfomycin Resistance of Escherichia coli and Salmonella spp. Among Cattle in Japan.
Multidrug-resistant ST11-KL64 hypervirulent Klebsiella pneumoniae with multiple bla- genes isolated from children's blood.
Pandemic one health clones of Escherichia coli and Klebsiella pneumoniae producing CTX-M-14, CTX-M-27, CTX-M-55 and CTX-M-65 ESβLs among companion animals in northern Ecuador.
The study identifies CTX-M-55, CTX-M-65, CTX-M-27, and CTX-M-14 ESβL-producing E. coli and K. pneumoniae in companion animals in Ecuador, highlighting their global One Health significance and the need for surveillance programs.
Pandemic one health clones of Escherichia coli and Klebsiella pneumoniae producing CTX-M-14, CTX-M-27, CTX-M-55 and CTX-M-65 ESβLs among companion animals in northern Ecuador.
The study identifies CTX-M-55, CTX-M-65, CTX-M-27, and CTX-M-14 ESβL-producing E. coli and K. pneumoniae in companion animals in Ecuador, highlighting their global One Health significance and the need for surveillance programs.
Highly drug resistant clone of Salmonella Kentucky ST198 in clinical infections and poultry in Zimbabwe.
The study identifies multiple AMR genes and mutations in Salmonella Kentucky ST198 strains from Zimbabwe, highlighting their multidrug resistance and the presence of specific resistance mechanisms such as blaCTX-M-14.1 and mutations in gyrA and parC.
Whole Genome Sequencing and Comparative Genomics Analysis of Goat-Derived Klebsiella oxytoca.
The study identified 448 drug resistance genes in the goat-derived K. oxytoca strain KOHN1, including genes conferring resistance to beta-lactams, tetracyclines, fluoroquinolones, and fosfomycins. It also identified 146 virulence genes, including vgrG, hcp, clpV, and fimA.
Essential oils modulate virulence phenotypes in a multidrug-resistant pyomelanogenic Pseudomonas aeruginosa clinical isolate.
The study identifies multiple AMR genes in the MDR P. aeruginosa strain U804, including beta-lactamases, aminoglycoside modifying enzymes, and efflux pumps, which contribute to its resistance against various antibiotics.
Circulation of a Unique Klebsiella pneumoniae Clone, ST147 NDM-1/OXA-48, in Two Diverse Hospitals in Calabria (Italy).
The study identifies multiple AMR genes, including bla OXA-48, bla NDM-1, bla CTX-M-15, and bla SHV, in K. pneumoniae strains from two hospitals in Calabria, Italy, highlighting the presence of multidrug-resistant clones.
Emergence of NDM-7-Producing Klebsiella quasipneumoniae subs. simillipneumoniae ST138 in a Hospital from the Northern Region of Brazil.
The study identifies the blaNDM-7 gene, fosA, and mutations in ompK36 and ompK37 as responsible for carbapenem resistance in a multidrug-resistant Klebsiella quasipneumoniae subs. similipneumoniae strain.
Epidemic trend of Salmonella from swines and broilers in China from 2014 to 2023 and genetic evolution analysis of ESBLs-producing strains.
The study identified several AMR genes in ESBL-producing Salmonella strains from swines and broilers in China, including blaCTX-M-14, blaTEM-1B, blaCTX-M-65, aac(6')-Iaa, floR, sul2, tet(B), arr-2, fosA3, dfrA12, mph(A), lnu(F), blaCTX-M-55, blaOXA-1, sul1, tet(A), catB3, qnrS1, and mcr-1.1. These genes conferred resistance to various antibiotics such as beta-lactams, aminoglycosides, sulfonamides, tetracyclines, rifampicin, fosfomycin, trimethoprim, macrolides, lincomycin, quinolones, and colistin.
Carbapenem-Resistant, Virulence Plasmid-Harboring Klebsiella pneumoniae, United States.
The study identifies six pVir-CRKP isolates from the United States, highlighting their multidrug resistance and enhanced virulence traits. These isolates exhibit resistance to various antibiotics, including carbapenems, cephalosporins, fluoroquinolones, and aminoglycosides, due to the presence of specific AMR genes and mutations.
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4, tet(X4), and mcr-1 genes in wild birds.
The study identifies the co-existence of fosA4, mcr-1, and tet(X4) genes in Escherichia coli isolates from wild birds in Pakistan, indicating the potential for horizontal gene transfer and the spread of multidrug-resistant plasmids.
In-depth genome and comparative genome analysis of a metal-resistant environmental isolate Pseudomonas aeruginosa S-8.
The study identified several antibiotic resistance genes in Pseudomonas aeruginosa S-8, including beta-lactamases (ampC, blaTEM, blaSHV, blaCTX-M), efflux pump components (mexB, mexA, oprM, acrB, tolC), and a transcriptional regulator (ampR). These genes contribute to resistance against various antibiotics such as beta-lactams, tetracycline, chloramphenicol, and fluoroquinolones.
Escherichia coli in Brazilian Poultry Fecal Samples: Co-Carriage of Fosfomycin and ESBL Resistance.
The study identifies fosA3 as a major contributor to fosfomycin resistance in E. coli isolates from Brazilian poultry fecal samples, with the gene often co-located with ESBL genes on transmissible plasmids.
Comprehensive genomic epidemiology and antimicrobial resistance profiles of clinical Klebsiella pneumoniae species complex isolates from a tertiary hospital in Wenzhou, China (2019-2021).
The study identified a variety of antimicrobial resistance genes in clinical Klebsiella pneumoniae species complex isolates, including bla KPC−2, bla CTX−M, bla SHV, aac(6')-Ib, aadA1, aadA2, aph(3')-Ia, oqxAB, qnrB19, qnrS1, tet(A), tet(D), sul1, sul2, sul3, cmlA1, floR, fosA, and fosA3. These genes confer resistance to multiple classes of antibiotics, highlighting the complexity of antimicrobial resistance in these isolates.
Comprehensive genomic epidemiology and antimicrobial resistance profiles of clinical Klebsiella pneumoniae species complex isolates from a tertiary hospital in Wenzhou, China (2019-2021).
The study identified a variety of antimicrobial resistance genes in clinical Klebsiella pneumoniae species complex isolates, including bla KPC−2, bla CTX−M, bla SHV, aac(6')-Ib, aadA1, aadA2, aph(3')-Ia, oqxAB, qnrB19, qnrS1, tet(A), tet(D), sul1, sul2, sul3, cmlA1, floR, fosA, and fosA3. These genes confer resistance to multiple classes of antibiotics, highlighting the complexity of antimicrobial resistance in these isolates.
High prevalence of plasmid-mediated Fosfomycin resistance in waterfowl-derived Escherichia coli strains: insights into genetic context and transmission dynamics in China.
The study identifies fosA3 as a prevalent plasmid-mediated fosfomycin resistance gene in waterfowl-derived E. coli strains, along with other resistance genes such as blaCTX-M-55, blaNDM-5, mcr-1.1, tetA, floR, qnrS, sul2, and aphA1. These genes contribute to multidrug resistance and highlight the importance of monitoring their spread.
First identification and whole-genome characterization of human-associated Enterobacter roggenkampii and Enterobacter sichuanensis carrying bla(IMI-4) carbapenemase in Costa Rica.
The study identifies the first occurrence of bla(IMI-4) carbapenemase in Costa Rica, carried by Enterobacter roggenkampii and Enterobacter sichuanensis. The gene is located within a chromosomal EcloIMEX-2-like element, highlighting its potential for interspecies mobility.
Plasmid-mediated colistin and fosfomycin resistance among clinical isolates of ESBL- and carbapenemase-producing Klebsiella pneumoniae in Northern Iran.
The study identified mcr-2 and fosA2 genes as contributors to colistin and fosfomycin resistance in ESBL- and carbapenemase-producing Klebsiella pneumoniae isolates in Northern Iran.
Genomic Characterization of NDM-1 Harboring Extensively-Drug Resistance Klebsiella pneumoniae Isolate From ICU-Admitted Patient With COVID-19.
The study identified multiple antimicrobial resistance genes in an extensively drug-resistant Klebsiella pneumoniae isolate, including bla NDM-1, armA, msrE, mphE, BRP, bla OXA-1, aadA2, dfrA12, qnrB1, bla CTX-M-15, and cat1, highlighting the complex resistance mechanisms in this isolate.
Pan-genome analysis of the Enterobacter hormaechei complex highlights its genomic flexibility and pertinence as a multidrug resistant pathogen.
The study identifies a wide range of antibiotic resistance genes in the Enterobacter hormaechei complex, highlighting its multidrug-resistant nature and the role of mobile genetic elements in the dissemination of resistance.
Pan-genome analysis of the Enterobacter hormaechei complex highlights its genomic flexibility and pertinence as a multidrug resistant pathogen.
The study identifies a wide range of antibiotic resistance genes in the Enterobacter hormaechei complex, highlighting its multidrug-resistant nature and the role of mobile genetic elements in the dissemination of resistance.
Pan-genome analysis of the Enterobacter hormaechei complex highlights its genomic flexibility and pertinence as a multidrug resistant pathogen.
The study identifies a wide range of antibiotic resistance genes in the Enterobacter hormaechei complex, highlighting its multidrug-resistant nature and the role of mobile genetic elements in the dissemination of resistance.
Genome-Based Molecular Diversity of Extended-Spectrum β-Lactamase-Producing Escherichia coli From Pigeons in China.
The study identifies multiple extended-spectrum β-lactamase (ESBL) genes, including bla CTX-M, bla TEM, bla OXA, bla LAP, and bla CMY, as well as other antibiotic resistance genes such as mcr-1, mcr-1.1, tet(X4), aadA1, aadA2, aph(6)-Id, aph(3")-Ib, aph(3')-Ia, aph(3')-IIa, aac(3)-IVa, aph(4)-Ia, tet(A), tet(M), sul2, sul3, dfrA14, qnrS1, arr-2, fosA3, cmlA5, floR, mph(A), and lnu(F) in ESBL-producing E. coli isolates from pigeons in China.
AmrProfiler: A Comprehensive Tool for Antimicrobial Resistance Gene Detection and Analysis
AmrProfiler identifies a wide range of AMR genes and mutations across multiple bacterial species, demonstrating high accuracy and broader species coverage compared to existing tools.
Clonal dissemination and persistence of Carbapenem-resistant bla (KPC-2) harbouring Klebsiella pneumoniae ST307 in a Tertiary Hospital in the Republic of Korea.
Integrated genomic-epigenomic-transcriptomic analyses reveal adaptive mechanisms of colistin and carbapenem resistance in Klebsiella pneumoniae and Enterobacter isolates
The study identifies multiple AMR genes and mutations associated with colistin and carbapenem resistance in Klebsiella pneumoniae and Enterobacter isolates, including beta-lactamases, fosfomycin resistance genes, and efflux pumps. Mutations in ompK35 were found to contribute to carbapenem resistance.
Genomic insights into antibiotic-resistant non-typhoidal Salmonella isolates from outpatients in Minhang District in Shanghai.
The study identifies multiple antibiotic resistance genes and mutations in non-typhoidal Salmonella isolates from Minhang District, Shanghai, highlighting the prevalence of multidrug-resistant strains and the role of specific genetic elements in resistance mechanisms.
Multidrug-resistant Klebsiella pneumoniae ST70 harboring bla(NDM) in a migratory Penguin.
The study identifies multiple antimicrobial resistance genes in a multidrug-resistant Klebsiella pneumoniae ST70 isolate from a Magellanic Penguin, highlighting the potential of migratory penguins as vectors of antimicrobial-resistant microorganisms.
Acquired antibiotic resistance of Pseudomonas spp., Escherichia coli and Acinetobacter spp. in the Western Balkans and Hungary with a One Health outlook.
The study identifies various acquired antibiotic resistance genes in Pseudomonas spp., Escherichia coli, and Acinetobacter spp. in the Western Balkans and Hungary, including beta-lactamases like bla VIM-2-like, bla NDM-1, bla OXA-23, and bla OXA-66, aminoglycoside resistance genes such as aacA4, aadA2, and aphA, sulfonamide resistance gene sul1, and others. These genes confer resistance to multiple antibiotics, highlighting the complexity of antimicrobial resistance in the region.
Whole-Genome Sequencing and Bioinformatics Analysis of ESBL-producing Klebsiella pneumoniae in a Ghanaian teaching hospital.
The study identified multiple beta-lactamase genes, including bla SHV, bla CTX-M-15, bla TEM-1B, and bla OXA-1, as well as a variety of other resistance genes such as aac(3)-IIa, aac(6')-Ib-cr, aph(3'')-Ib, aph(6)-Id, aadA1, qnrB1, qnrB4, qnrB2, qnrB19, sul2, sul1, dfrA14, dfrA15, OqxA, OqxB, fosA, qacE, tetA, and tetD. Mutations in ompK36 and ompK37 were also found to contribute to reduced susceptibility to cephalosporins and carbapenems.
Genomic snapshot of Klebsiella spp. isolates from clinically ill animals reveal diverse lineages with limited relatedness to human isolates.
The study identified several AMR genes, including oqxAB, fosA, blaSHV, and mcr-8.1, in Klebsiella spp. isolates from clinically ill animals. These genes conferred resistance to quinolones, phenicols, fosfomycin, beta-lactams, and colistin, respectively.
Clonal spread of bla(CTX-M-65) producing Salmonella enterica serovars detected in poultry retail meat in North Carolina, USA.
The study identifies the clonal spread of bla(CTX-M-65) producing Salmonella enterica serovars in poultry retail meat in North Carolina, USA. It characterizes the resistance profiles of these isolates, including the presence of bla(CTX-M-65), aac(3)-Iva, aadA1, aph(4)-Ia, floR, mdsA, mdsB, sul1, tet(A), dfrA14, aph(3')-Ia, sul2, aph(3'')-Ib, and fosA3.
Implications of gene expression heterogeneity in the interplay between acquired resistance and bacterial metabolism.
The study identifies and characterizes various AMR genes, including aac(6')-Ib-cr, bla OXA-48, bla KPC-3, qnrB1, and fosA, highlighting their expression heterogeneity influenced by nutrient availability and antimicrobial stress.
The genomic configurations driving antimicrobial resistance and virulence in colistin resistant Pseudomonas aeruginosa from an Egyptian Tertiary Oncology Hospital.
The study identified several AMR genes and mutations in colistin-resistant P. aeruginosa isolates, including blaNDM-1, blaOXA-1028, blaOXA-904, and mutations in phoQ and basR genes associated with colistin resistance.
A Retrospective Analysis of Urinary Tract Infections With Special Reference to the Phenotypic and Genotypic Detection of Fosfomycin-Resistant Escherichia coli Isolates at a Tertiary Care Center in South India.
The study identified fosfomycin-resistant Escherichia coli isolates, with the fosA3 gene detected in one of the three resistant isolates.
Clonal Dissemination of Pandrug-Resistant Klebsiella pneumoniae ST392KL27 in a Tertiary Care Hospital in Mexico.
Genomic characterization and multidrug resistance of Pseudomonas aeruginosa isolated from peregrine falcons in Saudi Arabia: A One Health perspective.
The study identified five AMR genes in a multidrug-resistant Pseudomonas aeruginosa isolate from peregrine falcons in Saudi Arabia, highlighting the zoonotic potential and the need for integrated AMR surveillance.
Research note: Emergence of bla(NDM-13) producing Escherichia coli from a broiler chicken and farm environment in Jiangsu Province, China.
The study identified blaNDM-13-producing E. coli strains in a chicken farm in Jiangsu Province, China, which exhibit multidrug resistance, including resistance to carbapenems, aminoglycosides, fluoroquinolones, tetracyclines, sulfonamides, and florfenicol. The study also characterizes the plasmids carrying blaNDM-13 and confirms their ability to transfer between bacteria.
Global phylogeography and genomic characterization of bla(NDM-1)-positive clinical Proteus mirabilis isolates from China.
The study identifies blaNDM-1 as a key determinant of carbapenem resistance in Proteus mirabilis isolates from China, along with other resistance genes such as blaCTX-M-14, blaCTX-M-65, and blaTEM-1. It also characterizes the genomic context of blaNDM-1, including its integration into SGI1 and plasmid-borne elements.
Dissemination dynamics of colistin resistance genes mcr-9 and mcr-10 across diverse Inc plasmid backbones.
The study characterizes the dissemination of colistin resistance genes mcr-9 and mcr-10 across diverse Inc plasmid backbones in Enterobacter species, highlighting their co-occurrence with other resistance genes and their global distribution.
Genomic Characterization of Pan-Drug Resistant Klebsiella pneumoniae KPNW Isolated From UTI Patient in Bangladesh.
The study identifies 42 antimicrobial resistance (AMR) genes in the pan-drug resistant Klebsiella pneumoniae isolate KPNW, including beta-lactamases (bla CTX-M-15, bla NDM-1, bla OXA-1, bla TEM-63, bla TEM-104, bla SHV-28), tetracycline resistance genes (tet(A)), and efflux pump genes (oqxA, oqxB, marA, marR, ompK37, pbp3, crp, h-ns, kpnG, kpnH, parC, rsmA). Additionally, the isolate shows resistance to polymyxin B and colistin through modifications in lipid A (eptB, arnT, lptD, msbA, vanG) and other mechanisms.
Molecular epidemiology of carbapenem-resistant Escherichia coli in a tertiary hospital located in the Dabie Mountains region, China.
The study identifies blaNDM-5 as the primary carbapenem resistance gene in CREc isolates, alongside other resistance genes such as blaNDM-13, blaNDM-6, blaKPC-2, and fosA3. These genes contribute to multidrug resistance and are associated with various virulence factors.
Multidrug-resistant Pseudomonas aeruginosa: Pathogenesis, resistance mechanisms, and novel therapeutic strategies.
The paper discusses the multidrug resistance mechanisms of Pseudomonas aeruginosa, including beta-lactamases, aminoglycoside modifying enzymes, efflux pumps, and mutations in porin genes. It highlights the role of these mechanisms in antibiotic resistance and the challenges they pose in treating infections.
Genetic diversity and antimicrobial resistance profiles of Salmonella enterica in the broiler supply chain in Harare, Zimbabwe: tracking transmission from farm to table.
The study identified several AMR genes and mutations in Salmonella enterica isolates from the broiler supply chain in Zimbabwe, including fosA7.2, qnrB19, aadA1, aph(3'')-Ib, aph(6)-Id, aac(3)-Id, fosA3, sul1, sul3, tetA, cmlA1, blaCMY-2, blaTEM-1B, blaCTX-M-14, and mutations in gyrA and parC. These genes and mutations confer resistance to various antibiotics, including fosfomycin, fluoroquinolones, aminoglycosides, sulfonamides, tetracyclines, chloramphenicol, and beta-lactams.
Genomic epidemiology of strains currently and formerly classified as Enterobacter spp. recovered from equine necropsy samples.
The study identified several AMR genes in Enterobacter spp. strains, including beta-lactamases (blaDHA-1, blaOXA-1, blaSHV-12, blaTEM-1B), aminoglycoside resistance genes (aac(6')-ib_cr), quinolone resistance genes (qnrB2, qnrB4), and fosfomycin resistance genes (fosA, fosA2). These genes contribute to resistance against multiple antibiotic classes.
Genomic epidemiology of strains currently and formerly classified as Enterobacter spp. recovered from equine necropsy samples.
The study identified several AMR genes in Enterobacter spp. strains, including beta-lactamases (blaDHA-1, blaOXA-1, blaSHV-12, blaTEM-1B), aminoglycoside resistance genes (aac(6')-ib_cr), quinolone resistance genes (qnrB2, qnrB4), and fosfomycin resistance genes (fosA, fosA2). These genes contribute to resistance against multiple antibiotic classes.
Emerging threat of antimicrobial resistance determinants and plasmid replicon types acquisition by Escherichia coli of poultry and other food-producing animal origin in China: local findings with global implications.
The study identifies multiple antimicrobial resistance genes in Escherichia coli from poultry and other food-producing animals in China, highlighting the prevalence of beta-lactamases, tetracycline resistance genes, aminoglycoside modifying enzymes, quinolone resistance genes, and sulfonamide resistance genes.
Antimicrobial resistance and virulence profiling of waterfowl-derived Salmonella in Sichuan from 2021 to 2023.
The study identified multiple antimicrobial resistance genes in waterfowl-derived Salmonella isolates, including aac(6')-Iaa, bla_OXA-1, bla_CTX-M-65, catB3, sul2, fosA3, lnu(F), dfrA17, and cfr. These genes conferred resistance to various antibiotics, highlighting the multidrug resistance profile of the isolates.
Genomic insights into novel ST7947 carbapenem-resistant hypervirulent Klebsiella pneumoniae: a threat from an Indian hospital setting.
The study identifies several AMR genes and mutations in the novel ST7947 carbapenem-resistant hypervirulent Klebsiella pneumoniae isolate BB-7, including bla CTX-M-15, bla SHV-28, bla TEM-1, bla OXA-1, bla OXA-232, armA, aadA2, baeR, tetD, adeF, emrR, AAC(6')-Ib-cr6, catI, sul1, mphE, msrE, dfrA1, oqxA, and fosA, as well as mutations in GyrA, ParC, OmpA, OmpK37, and ArnT that confer resistance to multiple antibiotics.
Global geographic and genomic epidemiology analysis of carbapenem-resistant Escherichia coli carrying bla(NDM-9).
The study characterizes bla NDM-9 -carrying carbapenem-resistant Escherichia coli (CREC) and identifies various antibiotic resistance genes (ARGs) contributing to multidrug resistance. It highlights the role of mobile genetic elements in the dissemination of bla NDM-9 and emphasizes the importance of surveillance for these high-risk clones.
Whole genome sequencing of a hypermucoviscous, multidrug-resistant Klebsiella pneumoniae subsp. pneumoniae K219 isolated from human sputum.
The study identified four key antibiotic resistance genes in the genome of K. pneumoniae subsp. pneumoniae K219: fosA, blaNDM-7, blaSHV-80, and blaTEM-1B, which confer resistance to various antibiotics.
Precise species identification and whole-genome sequencing analysis of Enterobacter cloacae complex causing bloodstream infections in China.
The study identified various AMR genes in Enterobacter cloacae complex (ECC) isolates, including bla ACT, bla NDM, and mcr-10, which confer resistance to beta-lactams, carbapenems, and polymyxins, respectively. It also found that E. roggenkampii was the most common species among carbapenem-resistant isolates and showed high resistance to both carbapenems and colistin.
Prevalence and genetic basis of extended-spectrum β-lactamase-producing Escherichia coli carriage in broiler farms in the United Arab Emirates.
The study identified bla TEM and bla CTX-M as the most common β-lactam resistance genes in ESBL-producing E. coli isolates from broiler farms in the UAE, with bla CTX-M-55 and bla CTX-M-15 being the prevalent variants. Additionally, the mcr-1.1 gene was detected in 10.3% of isolates, indicating colistin resistance.
In Vitro Evaluation of Fosfomycin Combinations Against Metallo-β-Lactamase-Producing Klebsiella pneumoniae and Pseudomonas aeruginosa Clinical Isolates.
The study evaluated the in vitro synergistic activity of fosfomycin (FOS) in combination with other antimicrobials against MBL-producing K. pneumoniae and P. aeruginosa. It found that FOS combinations showed significant synergy, particularly with CAZ-AVI and COL, suggesting their potential utility in treating infections caused by MBL-producing bacteria.
Molecular characterization of mcr-1.1-harboring multidrug-resistant Escherichia coli isolates from chicken in the United Arab Emirates: implications for one health surveillance.
The study identified mcr-1.1-harboring multidrug-resistant E. coli isolates from chicken in the UAE, highlighting the presence of various AMR genes and mutations contributing to resistance against multiple antibiotics, including colistin, beta-lactams, quinolones, and aminoglycosides.
Molecular characterization of mcr-1.1-harboring multidrug-resistant Escherichia coli isolates from chicken in the United Arab Emirates: implications for one health surveillance.
The study identified mcr-1.1-harboring multidrug-resistant E. coli isolates from chicken in the UAE, highlighting the presence of various AMR genes and mutations contributing to resistance against multiple antibiotics, including colistin, beta-lactams, quinolones, and aminoglycosides.
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