Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
ABC-F type ribosomal protection protein Lsa(A)
Overview
| Protein Change | Nucleotide Change | Mechanism | Organism | Resistance To | Database | Validation Status |
|---|---|---|---|---|---|---|
| T500I | - | - | Enterococcus faecium, Enterococcus faecalis | Clindamycin | Reslit | Candidate |
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years |
|---|
| Sequence Accession |
|---|
| Protein Accession |
|---|
| Lsa(A) | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 26 | STREPTOGRAMIN, VIRGINIAMYCIN M +21 | Enterococcus faecalis ATCC 29212 +13 | Alberta, Canada, Pacific region|Hawaii, Estonia|swine, Bangladesh, France, South Africa, Ghana, Shanghai, China, Europe, United Arab Emirates, China, Northern China | 2003, 2005, 2016, 2017, 2018, 2020, 2021, 2023, 2024, 2025 | AY225127.1 | AAO43110.1 |
| lsa | Reslit | 3 | Lincosamide, Streptogramin a +3 | Enterococcus faecalis +2 | Europe | 2003, 2005, 2018 | AY225127 | - |
| lsa(A) | Card DatabaseResFinder Database | 2 | CLINDAMYCIN, LINCOMYCIN +3 | Enterococcus faecalis ATCC 29212, Enterococcus faecalis +1 | - | 2003 | AY225127, AY737526 | AAO43110.1 |
| Lsa | Reslit | 2 | Lincosamide, Streptogramin +1 | Enterococcus faecalis | - | 2009, 2014 | - | - |
| lsaA | Reslit | 12 | Macrolide, Lincomycin +10 | Enterococcus faecalis +5 | China|Russia|Mongolia, Thailand, Europe, South Korea|Australia|America|The Netherlands|China, Belgium, Latvia, Saudi Arabia | 2017, 2018, 2020, 2021, 2023, 2024, 2025 | MSQG00000000|MSQU00000000 | - |
| LsaA | Reslit | 1 | Lincomycin | Enterococcus faecalis | - | 2021 | - | - |
Nonsense mutations in the lsa-like gene in Enterococcus faecalis isolates susceptible to lincosamides and Streptogramins A.
Nonsense mutations in the lsa-like gene in Enterococcus faecalis isolates susceptible to lincosamides and Streptogramins A.
Nonsense Mutations in the lsa-Like Gene in Enterococcus faecalis Isolates Susceptible to Lincosamides and Streptogramins A.
The study identifies nonsense mutations in the lsa-like gene in Enterococcus faecalis isolates that are susceptible to lincosamides and streptogramins A, demonstrating that the lsa gene is responsible for intrinsic resistance to these antibiotics.
Nonsense mutations in the lsa-like gene in Enterococcus faecalis isolates susceptible to lincosamides and Streptogramins A.
Nonsense mutations in the lsa-like gene in Enterococcus faecalis isolates susceptible to lincosamides and Streptogramins A., Differences in the Enterococcus faecalis lsa locus that influence susceptibility to quinupristin-dalfopristin and clindamycin.
Differences in the Enterococcus faecalis lsa Locus That Influence Susceptibility to Quinupristin-Dalfopristin and Clindamycin.
The study identifies the lsa gene in Enterococcus faecalis as responsible for resistance to quinupristin-dalfopristin, clindamycin, and dalfopristin. Variations in the lsa locus, including nucleotide changes and amino acid substitutions, influence the degree of resistance.
Differences in the Enterococcus faecalis lsa locus that influence susceptibility to quinupristin-dalfopristin and clindamycin.
Differences in the Enterococcus faecalis lsa locus that influence susceptibility to quinupristin-dalfopristin and clindamycin.
Differences in the Enterococcus faecalis lsa locus that influence susceptibility to quinupristin-dalfopristin and clindamycin.
Efflux-mediated drug resistance in bacteria: an update.
The paper provides an updated overview of drug efflux pumps in bacteria, focusing on their structure, mechanisms, and roles in multidrug resistance. It highlights the importance of RND, MFS, MATE, SMR, and ABC transporters in efflux-mediated resistance.
Complete genome sequencing and comparative analysis of the linezolid-resistant Enterococcus faecalis strain DENG1
ABC-F Proteins Mediate Antibiotic Resistance through Ribosomal Protection.
The study identifies vga(A), lsa(A), and cfr as genes that confer resistance to various antibiotics targeting the ribosome, with evidence supporting a ribosomal protection mechanism rather than efflux.
Characterization of Multi-Drug Resistant Enterococcus faecalis Isolated from Cephalic Recording Chambers in Research Macaques (Macaca spp.).
The study identified various AMR genes and mutations in Enterococcus faecalis isolates from macaque cephalic implants, highlighting the presence of high-level aminoglycoside resistance, tetracycline resistance, and bacitracin resistance. These findings emphasize the complexity of AMR in clinical settings and the need for targeted antimicrobial strategies.
Rapid in situ imaging and whole genome sequencing of biofilm in neonatal feeding tubes: A clinical proof of concept.
The study identified several AMR genes in Enterococcus faecalis and Enterobacter hormaechei isolated from neonatal feeding tubes, including lsaA (macrolide resistance), tetM (tetracycline resistance), blaACT-15 (beta-lactam resistance), and fosA (fosfomycin resistance).
Antibiotic resistance ABCF proteins reset the peptidyl transferase centre of the ribosome to counter translational arrest.
The study identifies VgaA and LsaA as ABCF proteins that confer resistance to lincosamide antibiotics by protecting the ribosomal peptidyl transferase centre (PTC) from inhibition. VgaA and LsaA require NTP hydrolysis for their function and the extended inter-ABC linker region is critical for their activity.
Comparative genomic analysis of Enterococcus faecalis: insights into their environmental adaptations.
The study identified 293 environment-specific genes and found that blood-originating strains had the highest number of antibiotic resistance genes, including vanA and vanB-type vancomycin resistance clusters.
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.
The study characterizes various AMR genes involved in resistance to multiple antibiotics, including beta-lactams, aminoglycosides, macrolides, tetracyclines, and others, in different bacterial species such as Staphylococcus aureus, Enterococcus faecium, and Serratia marcescens.
Antimicrobial Resistance in Lactobacillus Species: A Genomic and Phenotypic Analysis
The study identifies various tetracycline, erythromycin, chloramphenicol, and aminoglycoside resistance genes in Lactobacillus species, highlighting their potential role in antimicrobial resistance and horizontal gene transfer.
Epidemiological characteristics and genetic structure of linezolid-resistant Enterococcus faecalis.
sraX: A Novel Comprehensive Resistome Analysis Tool.
The study evaluated the effectiveness of sraX in analyzing the resistome of 197 Enterococcus spp. strains, confirming 99.15% of the resistance detections from a previous study. Several AMR genes were identified and validated, showing high concordance between genotypic and phenotypic resistance data.
Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum.
The study identified several AMR genes in Enterococcus spp., including erm(B), tet(M), optrA, dfrE, lsa(A), aac(6')-Ib, eat(A), ant(6)-Ia, aph(3')-IIIa, sat4, tet(L), bcrB, bcrC, dfrF, and dfrG, which confer resistance to various antibiotics such as macrolides, tetracyclines, oxazolidinones, trimethoprim, and aminoglycosides.
Antibiotic Resistance-Susceptibility Profiles of Enterococcus faecalis and Streptococcus spp. From the Human Vagina, and Genome Analysis of the Genetic Basis of Intrinsic and Acquired Resistances.
The study identified tetracycline resistance genes tet(M) and tet(L) in Enterococcus faecalis and Streptococcus anginosus, and the lsaA gene associated with resistance to clindamycin and quinupristin-dalfopristin in E. faecalis. These genes were validated through PCR, genome sequencing, and functional analysis.
A Longitudinal Evaluation of the Bacterial Pathogens Colonizing Chronic Non-Healing Wound Sites at a United States Military Treatment Facility in the Pacific Region.
The study identified multiple antimicrobial resistance genes in bacterial isolates from chronic non-healing wounds, including beta-lactamases, aminoglycoside modifying enzymes, macrolide resistance genes, and others. These genes were found in various bacterial species such as E. coli, S. aureus, P. aeruginosa, and others.
Exploring Antibiotic Resistance Diversity in Leuconostoc spp. by a Genome-Based Approach: Focus on the lsaA Gene.
The lsaA gene was identified in Leuconostoc pseudomesenteroides NCDO 768 T and Leuconostoc fallax ATCC 700006 T, conferring resistance to clindamycin and quinupristin-dalfopristin. The gene's expression increased in the presence of these antibiotics, indicating its role in resistance.
New Insights into the Virulence Traits and Antibiotic Resistance of Enterococci Isolated from Diverse Probiotic Products.
The study identifies multiple antibiotic resistance genes, including msrC, lsaA, aac(6')-Ii, vanC, and tetM, in enterococci isolated from probiotic products, highlighting the potential risk of antimicrobial resistance and virulence factors in these isolates.
Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs.
The study identified vanB genes in two vancomycin-resistant E. faecalis isolates and characterized various tetracycline, macrolide, lincosamide, and aminoglycoside resistance genes in E. faecalis and E. faecium isolates from different sources in Estonia.
Ribosome Protection Proteins-'New' Players in the Global Arms Race with Antibiotic-Resistant Pathogens.
The paper discusses ribosome protection proteins (RPPs) as significant contributors to antibiotic resistance, particularly against tetracyclines, fusidic acid, and various other antibiotics targeting the ribosome. Key RPPs include TetM, TetO, FusB, VgaA, LsaA, MsrE, MsrA, optrA, and poxtA, which confer resistance through mechanisms involving direct interaction with the ribosome and displacement of antibiotics.
Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens.
The study identifies and characterizes the structural basis of resistance mediated by ABCF proteins LsaA, VgaA LC, and VgaL against pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens.
Taxonomic Assignment-Based Genome Reconstruction from Apical Periodontal Metagenomes to Identify Antibiotic Resistance and Virulence Factors.
The study identified several antibiotic resistance genes (ARGs) in metagenomic assemblies from apical periodontal infections, highlighting the presence of multidrug resistance mechanisms in Enterobacter and Pseudomonas species.
Virulence and antibiotic-resistance genes in Enterococcus faecalis associated with streptococcosis disease in fish.
The study identified various antibiotic-resistance genes in three strains of Enterococcus faecalis associated with streptococcosis in fish, including genes conferring resistance to tetracycline, macrolide-lincosamide-streptogramin, and vancomycin.
An in-house 45-plex array for the detection of antimicrobial resistance genes in Gram-positive bacteria.
The study describes an in-house 45-plex array for detecting antimicrobial resistance genes in Gram-positive bacteria, identifying optrA, poxtA, and vanA as significant resistance markers in Enterococcus and Staphylococcus isolates.
Microbiological Epidemiology of Invasive Infections Due to Non-Beta-Hemolytic Streptococci, France, 2021.
The study characterizes AMR genes and mutations in non-beta-hemolytic streptococci, highlighting high resistance rates to beta-lactams, MLS, and tetracyclines, with specific resistance mechanisms involving erm(A), erm(B), lnu(C), lsa(A), meff, and tet(M).
Antimicrobial resistance and whole genome sequencing of novel sequence types of Enterococcus faecalis, Enterococcus faecium, and Enterococcus durans isolated from livestock.
The study identifies several antimicrobial resistance genes in Enterococcus species isolated from livestock in South Africa, highlighting the presence of multidrug-resistant strains and emphasizing the need for genomic surveillance to monitor the spread of antimicrobial resistance in food chain animals.
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance.
The study characterizes several antimicrobial resistance genes, including tet(W), tet(Q), mdf(A), erm(B), lsa(A), and aac(6')-Iaa, through the use of a spiked-in mock community and long-read sequencing.
Enterococcus species: insights into antimicrobial resistance and whole-genome features of isolates recovered from livestock and raw meat in Ghana.
The study identified various antimicrobial resistance genes in Enterococcus spp. isolated from livestock and raw meat in Ghana, including genes conferring resistance to erythromycin, tetracycline, chloramphenicol, and other antibiotics. Notable genes include aac(6')-Ii, aph(3')-III, ant(6)-Ia, erm(B), erm(T), msr(C), lsa(A), lsa(E), lnu(B), tet(L), tet(M), tet(S), dfrG, cat, pbp5, and ClpL.
Prevalence, antibiotic resistance and molecular characterization of Staphylococcus aureus in ready-to-eat fruits and vegetables in Shanghai, China.
The study identified several antibiotic resistance genes in Staphylococcus aureus isolates from ready-to-eat fruits and vegetables in Shanghai, China, including genes conferring resistance to beta-lactams, fluoroquinolones, aminoglycosides, lincosamides, and fosfomycin.
Evaluation of Antimicrobial Resistancein Clinical Isolates of Enterococcus spp. Obtained from Hospital Patients in Latvia.
The study identifies several AMR genes and mutations in Enterococcus isolates, including vanB for vancomycin resistance, lsaA, lsaE, lnuB for lincosamide resistance, tetM and tetL for tetracycline resistance, aac6'-Ii, aac6'-aph2'', aph3'-III, and ant6-Ia for aminoglycoside resistance, msrC, ermB, and ermT for macrolide resistance, and mutations in gyrA, parC, pbp5, and 23S rRNA for fluoroquinolone, penicillin, and linezolid resistance.
Genomic evaluation of the probiotic and pathogenic features of Enterococcus faecalis from human breast milk and comparison with the isolates from animal milk and clinical specimens.
The study identified antibiotic resistance genes lsaA, tetM, and ermB in Enterococcus faecalis isolates from human breast milk, with fewer resistance genes compared to clinical isolates. Mutations in gyrA and parC were observed in clinical isolates, contributing to quinolone resistance.
Antimicrobial resistance, virulence gene profiles, and molecular epidemiology of enterococcal isolates from patients with urinary tract infections in Shanghai, China.
The study identified linezolid-resistant E. faecalis strains carrying the optrA gene, along with other resistance genes such as fexA, ermA/B, and lsa(A).
An Insight into the Presence of Antimicrobial Resistance Genes in Opportunistic Pathogenic Bacteria Isolated from Farm-Reared Crickets.
The study identified various antimicrobial resistance genes in opportunistic pathogenic bacteria isolated from farm-reared crickets, including beta-lactamases such as blaSHV-81, blaSHV-110, blaZ, blaOXY-2-6, blaACT-16, blaSHV-70, blaSHV-13, and blaSHV-11, as well as genes for fosfomycin resistance (fosB1, fosA), tetracycline resistance (tet(J)), and disinfectant resistance (qacG).
Salad Vegetables as a Reservoir of Antimicrobial-Resistant Enterococcus: Exploring Diversity, Resistome, Virulence, and Plasmid Dynamics.
The study identified vancomycin resistance genes (vanC, vanXY-C2) in a vancomycin-susceptible E. faecalis isolate, along with optrA, tetM, ermB, lsa(A), msr(C), and ant(6)-Ia genes in Enterococcus isolates, highlighting the presence of multidrug-resistant strains in salad vegetables.
Genomic and clinical characterization of linezolid resistance in Enterococcus species from cancer patients in China.
The study identified the optrA gene as the primary mechanism of linezolid resistance in Enterococcus species from cancer patients in China, along with other resistance genes such as tet(M), erm(A), and erm(B).
Whole genome sequence of multidrug-resistant Staphylococcus haemolyticus and Enterococcus faecalis isolates from public gymnasium equipment reveals evolving infection potential and resistance.
The study identified multiple antibiotic resistance genes in multidrug-resistant Staphylococcus haemolyticus and Enterococcus faecalis isolates from public gymnasium equipment, highlighting their potential to resist various antibiotics and posing a health risk in communal environments.
Phylogenetic and pathogenic description of Enterococcus faecalis at a Northern Chinese hospital.
The study identified lsa(A) as an intrinsic resistance gene in Enterococcus faecalis isolates, conferring resistance to quinupristin/dalfopristin. No vancomycin-resistant genes were found, and the ARG profiles were consistent with antimicrobial susceptibility tests.
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