Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
ABC-F type ribosomal protection protein Msr(D)
Overview
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| Msr(D) | Reference Gene CatalogResFinder DatabaseReslit | 23 | QUINUPRISTIN, STREPTOGRAMIN B +13 |
| North America|Europe|Africa|Asia, Japan, China, USA, Iceland, Europe, Denmark, China|United States|Canada|Japan|Switzerland, Southwest China, Chiang Mai province, Northern Thailand|Thailand, United Kingdom, Portugal, Sub-Saharan Africa|Middle East & North Africa|South Asia|Europe, United Arab Emirates, Australia |
| 2001, 2004, 2014, 2016, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025 |
| AF274302.1 |
| AAK69028.1 |
| msr(D) | ResFinder Database | 1 | QUINUPRISTIN, PRISTINAMYCIN IA +4 | Streptococcus pneumoniae | - | 2001 | AF274302, AF227520 | - |
| Msr(C) | ResFinder Database | 1 | QUINUPRISTIN, STREPTOGRAMIN B +5 | Streptococcus pneumoniae | - | 2016 | AF227520.1 | AAG12999.1 |
| msrD | Reslit | 15 | Macrolide, Erythromycin +4 | Streptococcus pneumoniae +24 | Europe, United States, Region 2|Region 3|Region 4, UK, Myanmar, Africa|Asia|Europe|North America|South America|global, Southern Germany|various, USA, Southwest China, Thailand | 2016, 2017, 2019, 2020, 2021, 2022, 2023, 2024, 2025 | PRJEB14267 | - |
| MsrD | Reslit | 1 | Erythromycin, Telithromycin +1 | Staphylococcus aureus | - | 2021 | - | - |
| msr D | Reslit | 1 | Multiple antibiotics | Escherichia coli +1 | North America | 2023 | ERP146025 | - |
Structure and dissemination of a chromosomal insertion element encoding macrolide efflux in Streptococcus pneumoniae.
Structure and dissemination of a chromosomal insertion element encoding macrolide efflux in Streptococcus pneumoniae.
Structure and dissemination of a chromosomal insertion element encoding macrolide efflux in Streptococcus pneumoniae., Characterization of a genetic element carrying the macrolide efflux gene mef(A) in Streptococcus pneumoniae.
Characterization and prevalence of MefA, MefE, and the associated msr(D) gene in Streptococcus pneumoniae clinical isolates.
The study characterizes the MefA, MefE, and msr(D) genes in Streptococcus pneumoniae clinical isolates, demonstrating that these genes confer resistance to macrolides and ketolides. The msr(D) gene was shown to function independently as an efflux pump.
Nucleotide sequence of conjugative prophage Φ1207.3 (formerly Tn1207.3) carrying the mef(A)/msr(D) genes for efflux resistance to macrolides in Streptococcus pyogenes.
The study characterizes the conjugative prophage Φ1207.3 carrying the mef(A)/msr(D) genes, which encode efflux pumps responsible for macrolide resistance in Streptococcus pyogenes.
Predominant role of msr(D) over mef(A) in macrolide resistance in Streptococcus pyogenes.
Predominant role of msr(D) over mef(A) in macrolide resistance in Streptococcus pyogenes.
The study demonstrates that msr(D) plays a more predominant role in macrolide resistance in Streptococcus pyogenes compared to mef(A), as evidenced by significant reductions in macrolide resistance upon msr(D) knockout and greater resistance conferred by msr(D) gene introduction.
Predominant role of msr(D) over mef(A) in macrolide resistance in Streptococcus pyogenes.
Inducible Expression of both ermB and ermT Conferred High Macrolide Resistance in Streptococcus gallolyticus subsp. pasteurianus Isolates in China.
The study identifies that the inducible expression of both ermB and ermT genes confers high macrolide resistance in S. gallolyticus subsp. pasteurianus isolates from China.
Nosocomial Outbreak of Drug-Resistant Streptococcus pneumoniae Serotype 9V in an Adult Respiratory Medicine Ward.
The study identifies the presence of tetracycline resistance gene tetM, and macrolide resistance genes mefA and msrD in a nosocomial outbreak of drug-resistant Streptococcus pneumoniae serotype 9V.
Whole-genome Sequencing for Surveillance of Invasive Pneumococcal Diseases in Ontario, Canada: Rapid Prediction of Genotype, Antibiotic Resistance and Characterization of Emerging Serotype 22F.
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015.
The study identified several AMR genes and mutations in invasive group A streptococci, including ermT, ermB, ermTR, tetM, lsaC, mef, msrD, and mutations in ParC and GyrA that confer resistance to macrolides, tetracycline, and fluoroquinolones.
Type M Resistance to Macrolides Is Due to a Two-Gene Efflux Transport System of the ATP-Binding Cassette (ABC) Superfamily.
The study identifies mef(A) and msr(D) as encoding an ABC efflux transport system responsible for type M macrolide resistance in streptococci.
Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes
Tylosin exposure did not significantly alter the fecal resistome of cattle, but geographical regions influenced resistome composition. Macrolide resistance genes mphB, mefA, and msrD were detected in fecal samples.
Unexpected relationships between frequency of antimicrobial resistance, disease phenotype and emm type in group A Streptococcus.
The study identifies specific AMR genes such as tet(M), erm(B), mef(A), msr(D), tet(O), erm(A), ant(6)-Ia, aph(3')-III, and erm(T) associated with resistance to tetracycline, erythromycin, clindamycin, and aminoglycosides in group A Streptococcus (GAS) strains. These genes are linked to high-frequency resistance in certain emm types, particularly emm11, emm75, emm77, and emm92, which are overrepresented in invasive GAS infections.
Population Genomic Molecular Epidemiological Study of Macrolide-Resistant Streptococcus pyogenes in Iceland, 1995 to 2016: Identification of a Large Clonal Population with a pbp2x Mutation Conferring Reduced In Vitro β-Lactam Susceptibility.
The study identifies a large clonal population of macrolide-resistant Streptococcus pyogenes in Iceland, with the majority of isolates harboring the mef(A) and msr(D) genes responsible for macrolide resistance. Additionally, a pbp2x mutation (Met 593 Thr) was found to confer reduced beta-lactam susceptibility.
Evolution of antibiotic resistance at low antibiotic concentrations including selection below the minimal selective concentration.
The study identifies ermF, intI1, and mphA as genes that show positive selection under specific antibiotic concentrations, highlighting their role in antibiotic resistance development at low concentrations.
Epidemiological analysis of pneumococcal strains isolated at Yangon Children's Hospital in Myanmar via whole-genome sequencing-based methods.
The study identified multiple AMR genes and mutations in pneumococcal strains from Myanmar, including genes conferring resistance to azithromycin, tetracycline, chloramphenicol, and quinolones, as well as mutations in penicillin-binding proteins and DNA gyrase. These findings highlight the spread of AMR in pneumococcal strains in Myanmar.
WGS of Commensal Neisseria Reveals Acquisition of a New Ribosomal Protection Protein (MsrD) as a Possible Explanation for High Level Azithromycin Resistance in Belgium.
The study identified the msr(D) gene, a ribosomal protection protein, as a novel mechanism for high-level azithromycin resistance in nonpathogenic Neisseria, particularly in Neisseria subflava. Additionally, the tetM gene was found in some Neisseria isolates, contributing to tetracycline resistance.
Molecular Identification of Invasive Non-typeable Group B Streptococcus Isolates From Denmark (2015 to 2017).
The study identified several AMR genes associated with erythromycin and clindamycin resistance in invasive non-typeable Group B Streptococcus isolates from Denmark, including mre(A), erm(B), erm(A), mef(A), msr(D), and Isa(C).
A Peek into the Plasmidome of Global Sewage
The study identifies several antimicrobial resistance (AMR) genes in plasmidomes from global sewage samples, highlighting the prevalence of macrolide, lincosamide, streptogramin B, and quinolone resistance genes on plasmids.
Ribosome Protection Proteins-'New' Players in the Global Arms Race with Antibiotic-Resistant Pathogens.
The paper discusses ribosome protection proteins (RPPs) as significant contributors to antibiotic resistance, particularly against tetracyclines, fusidic acid, and various other antibiotics targeting the ribosome. Key RPPs include TetM, TetO, FusB, VgaA, LsaA, MsrE, MsrA, optrA, and poxtA, which confer resistance through mechanisms involving direct interaction with the ribosome and displacement of antibiotics.
Investigation of the Genomic and Pathogenic Features of the Potentially Zoonotic Streptococcus parasuis.
The study identified the presence of macrolide resistance genes msr(D) and mef(A) in S. parasuis strains BS26 and BS27, which conferred resistance to erythromycin and azithromycin. Additionally, these strains exhibited resistance to trimethoprim-sulfamethoxazole despite lacking known resistance genes for this class.
Molecular Characterization Based on Whole-Genome Sequencing of Streptococcus pneumoniae in Children Living in Southwest China During 2017-2019.
The study identified the presence of erythromycin resistance gene erm(B) and tetracycline resistance gene tet(M) in Streptococcus pneumoniae isolates from children in Southwest China, highlighting the prevalence of resistance to these antibiotics.
Population structure of ocular Streptococcus pneumoniae is highly diverse and formed by lineages that escape current vaccines.
The study identifies macrolide resistance genes mefA, msrD, ermB, and tetracycline resistance gene tetM in ocular Streptococcus pneumoniae isolates, highlighting the prevalence of resistance to macrolides and tetracycline in this population.
Successful Intra- but Not Inter-species Recombination of msr(D) in Neisseria subflava.
The study shows that the msr(D) gene, which confers macrolide resistance, can be efficiently transferred within Neisseria subflava but not between N. subflava and N. gonorrhoeae.
Prior exposure to microcystin alters host gut resistome and is associated with dysregulated immune homeostasis in translatable mouse models.
The study identifies that prior exposure to microcystin-LR alters the gut resistome, increasing the abundance of antibiotic resistance genes such as mefA, msrD, mel, tet40, and ant6, which are associated with resistance to macrolides, tetracycline, and aminoglycosides.
Genetic diversity and variation in antimicrobial-resistance determinants of non-serotype 2 Streptococcus suis isolates from healthy pigs.
The study identified 18 AMR genes in non-serotype 2 Streptococcus suis isolates from healthy pigs, including genes conferring resistance to aminoglycosides, macrolides, lincosamides, tetracyclines, oxazolidinones, nucleosides, and phenicols.
Streptococcus pyogenes Φ1207.3 Is a Temperate Bacteriophage Carrying the Macrolide Resistance Gene Pair mef(A)-msr(D) and Capable of Lysogenizing Different Streptococci.
The study identifies the macrolide resistance gene pair mef(A)-msr(D) carried by the temperate bacteriophage Φ1207.3, which is capable of lysogenizing various streptococcal species.
The oral microbiota is a reservoir for antimicrobial resistance: resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis.
The study identified various antimicrobial resistance genes (ARGs) in the oral microbiota, including mefA, msrD, ermB, ermF, cfxA, blaCSP(1), tetM, tetQ, and pgpB, which confer resistance to antibiotics such as erythromycin, azithromycin, penicillin, ampicillin, tetracycline, and colistin. These genes were found in multiple bacterial species and were associated with different resistotypes in healthy, caries, and periodontitis groups.
Impact of immigration on antibiotic resistance genes in activated sludge: A study using digital droplet PCR and amplicon sequencing
The study reveals that immigration of influent wastewater into activated sludge leads to an increase in the abundance of over 70% of the quantified antibiotic resistance genes (ARGs). Specific ARGs such as blaTEM, blaMOX, qnrS, qnrB, mphE, dfrA, tetO, tetQ, tetE, marR, msrD, robA, qacL, blaOXA, and ereA were found to increase in abundance with immigration, indicating the impact of influent immigration on the persistence of AMR in wastewater treatment plants.
Seasonal Azithromycin Use in Paediatric Protracted Bacterial Bronchitis Does Not Promote Antimicrobial Resistance but Does Modulate the Nasopharyngeal Microbiome.
The study found that seasonal azithromycin use in pediatric protracted bacterial bronchitis did not promote antimicrobial resistance but modulated the nasopharyngeal microbiome. High levels of azithromycin resistance were observed in S. pneumoniae and H. influenzae, but no significant increase in resistance was linked to azithromycin use. Genomic sequencing identified resistance genes such as erm(B), tet(M), msr(D), and mef(A) in S. pneumoniae isolates.
Characterization of the resistome and predominant genetic lineages of Gram-positive bacteria causing keratitis.
The study characterizes the resistome of Gram-positive bacteria causing keratitis, identifying several AMR genes and mutations associated with resistance to antibiotics such as macrolides, aminoglycosides, tetracyclines, and fluoroquinolones. Key findings include the prevalence of ermA, ermB, ermC, mphC, msrA, msrD, mecA, ant(9)-Ia, ant(4′)-Ib, aac(6′)-aph(2″), aph(3′)-III, fosB, tetK, tetM, dfrG, dfrC, and dfrE genes, along with mutations in gyrA and parC contributing to fluoroquinolone resistance.
Serotype, antibiotic susceptibility and whole-genome characterization of Streptococcus pneumoniae in all age groups living in Southwest China during 2018-2022.
The study identified several AMR genes in Streptococcus pneumoniae isolates from Southwest China, including msrD, mefA, ermB, tetM, and catTC, which confer resistance to erythromycin, tetracycline, and chloramphenicol. High levels of resistance to erythromycin (96.96%) and tetracycline (79.85%) were observed, along with significant multidrug resistance.
Microbial spectrum and resistance of odontogenic abscesses - microbiological analysis using next generation sequencing.
The study identified multiple AMR genes in odontogenic abscesses using NGS, including genes conferring resistance to tetracyclines, macrolides, lincosamides, aminoglycosides, chloramphenicol, sulfonamides, penicillins, and others. Notably, Fusobacterium showed resistance to clindamycin.
Antibiotic Resistance and Serotypes Distribution in Streptococcus agalactiae Bulgarian Clinical Isolates During the Years of 2021-2024.
The study identified several AMR genes associated with macrolide, lincosamide, and tetracycline resistance in Streptococcus agalactiae isolates from Bulgaria. These include ermB, ermA/TR, ermC, mefA, mefE, msrD, lnuB, lsaC, lsaE, tetM, and tetO. High resistance rates to macrolides (60.3%) and tetracyclines (89.1%) were observed.
Antibiotic susceptibility testing and molecular characterization based on whole-genome sequencing of Streptococcus pneumoniae isolates from pediatric infections at the National Regional Medical Center of Southwest China during the COVID-19 pandemic.
The study identified several AMR genes in Streptococcus pneumoniae isolates, including tet(M), erm(B), msr(D), and mef(A), which confer resistance to tetracycline, erythromycin, and macrolides. These findings highlight the genetic basis of antibiotic resistance in pneumococcal isolates during the post-pandemic period in Southwest China.
Predomination of hypervirulent ST283 and genetic diversity of levofloxacin resistance in multidrug-resistant, hypervirulent Streptococcus agalactiae in Thailand.
The study identified multiple AMR genes and mutations associated with tetracycline, erythromycin, clindamycin, and levofloxacin resistance in multidrug-resistant, hypervirulent Streptococcus agalactiae isolates in Thailand, highlighting the predominance of hypervirulent ST283 and the emergence of MDR-GBS.
Increase of macrolide resistance among Streptococcus pyogenes pharyngitis driven by a mef(A)-msr(D)/emm2-ST55 lineage in Portugal (2014-2019).
The study identifies the emergence of a mef(A)-msr(D) positive emm2-ST55 lineage as a major driver of increased macrolide resistance in Streptococcus pyogenes pharyngitis in Portugal between 2014 and 2019. It also characterizes various macrolide resistance genes including erm(A), erm(B), erm(T), tet(O), and tet(M) associated with different genetic lineages.
Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes.
The study identifies several AMR genes, including aph(6)-id_2, mef(c), mef(b), mph(e), mph(g), msr(d), lnu(b), lnu(d), aadA, ant(6)-Ia, blaCTX-M, blaTEM, blaSHV, blaOXA, qnrS1, mcr-1, and vanA, which are associated with resistance to various antibiotics such as aminoglycosides, macrolides, lincosamides, beta-lactams, fluoroquinolones, polymyxins, and glycopeptides.
Efflux-Mediated Macrolide Resistance in Clinical Streptococcus Isolates: A Comparative Molecular Study.
The study identified mef(A/E) as the dominant efflux-mediated macrolide resistance gene in UAE Streptococcus isolates, with functional validation of its efflux activity. msr(D) was also detected but at a lower frequency. No tet(K) was found.
Cervicovaginal microbiome composition and absolute quantity are associated with pelvic inflammatory disease.
The study found that PID cases were associated with higher abundance of G. vaginalis and other CST IV organisms, while controls had higher levels of L. crispatus. No specific AMR genes were characterized in this paper.
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