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Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
tetracycline-inactivating monooxygenase Tet(X1)
Overview
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| Tet(X1) | Reference Gene Catalog | 1 | TETRACYCLINE | Bacteroides thetaiotaomicron | - | 2001 | AJ311171.1 | - |
| tetX | Reslit | 40 |
| Tetracycline, Doxycycline +2 |
| Escherichia coli +23 |
| Minnesota, agricultural soils|grassland soils, Latin America, Finland, Italy, Amazon River|Kalamas River|Cam River|Cambridge|Amazon River Plume, Vermont|United States, Spain, Europe|United States, Southeastern Asia|South Asia|North Africa|Eastern Africa|Southern Asia|Northern Africa|Southeast Asia|global, China, Tunisia, Canada, Japan, Russia, Indonesia, Peru, Danakil Depression, Afar Region, Ethiopia, New York Metropolitan area, Europe, Europe|Austria|Hungary, North America|Canada |
| 1991, 2010, 2015, 2016, 2017, 2018, 2019, 2021, 2022, 2023, 2024, 2025 |
| PMC207172 |
| - |
| tet(X1) | Card DatabaseResFinder DatabaseReslit | 5 | MINOCYCLINE, TETRACYCLINE +3 | Riemerella anatipestifer, Bacteroides fragilis, Pseudomonas aeruginosa +8 | Guangdong|China, China|Europe|Asia|North America|South America | 2010, 2020, 2024 | GU014535, M37699, AB097942 | AAA27471.1 |
| tet(X) | Reslit | 49 | Tetracycline, Doxycycline +2 | Bacteroidetes +28 | United States|USA, Europe, Denmark, China, Germany|France|Netherlands|Belgium, Denmark|Spain|France|Netherlands, Global, Shanghai, China, Sweden|India|Global, North America|Europe, China|Sierra Leone|USA|Hungary|Americas|Czech Republic|France|Japan, Ontario, Canada|North America, Vietnam, Pakistan, Brazil, Chile, Europe|Asia|North America|South America|global, Malaysia, Bangladesh, Minnesota, global|Greece|India|Morocco|Pakistan, Thailand, Shandong|Hebei|Jiangsu|Guangxi|Fujian|Henan|Guangdong, Europe|Australia|Asia|Belgium|Germany|Switzerland, global, Poland, China|Europe|Asia|North America|South America, Guangzhou, Bulgaria, North America, Lebanon | 2011, 2012, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025 | GU951538|FN597254|AY894138|AEEL01000024|AEEL01000025|AEEL01000026|AEEL01000027|AEEL01000028|HN150556–HN150563|HR941095–HR941098|JN104731 | - |
| tet X | Reslit | 5 | Tetracycline, Doxycycline | Bacillus cereus +5 | Yangzhou City, Guangdong Province, Europe, Poland, Shandong Province, China | 2018, 2021, 2023 | KX981212|KX981438|KY048431|KY048441 | - |
| TetX | Reslit | 3 | Tetracycline, Tigecycline | Escherichia coli +3 | - | 2018, 2022, 2023 | PDB:4a6n | - |
| tetX1 | Reslit | 1 | Tetracycline | Escherichia coli | - | 2018 | PDB:4a6n | - |
| Tet(X) | Reslit | 2 | Tetracycline | Escherichia coli +1 | - | 2019, 2025 | KU547176.1 | - |
| TETX | Reslit | 2 | Tetracycline | Bacteroidetes +4 | Alberta, Canada | 2019, 2024 | - | - |
Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon.
Evidence that a novel tetracycline resistance gene found on two Bacteroides transposons encodes an NADP-requiring oxidoreductase.
The study identifies a novel tetracycline resistance gene, tetX, located on Bacteroides transposons Tn4351 and Tn4400, which encodes an NADP-requiring oxidoreductase that chemically modifies tetracycline.
Characterization of tetracycline modifying enzymes using a sensitive in vivo reporter system.
The study characterizes the TetX enzyme, an FAD-dependent monooxygenase from Bacteroides fragilis, which modifies tetracycline and its derivatives, leading to reduced susceptibility to these antibiotics.
Prevalence and molecular characterization of chloramphenicol resistance in Riemerella anatipestifer isolated from ducks and geese in Taiwan., Evidence that a novel tetracycline resistance gene found on two Bacteroides transposons encodes an NADP-requiring oxidoreductase.
The gut as reservoir of antibiotic resistance: microbial diversity of tetracycline resistance in mother and infant.
The study identified various tetracycline resistance genes, including tet(M), tet(L), erm(T), tet(W), tet(O), and tet(X), in the gut microbiota of a mother and her infant. It also discovered a novel composite transposon, Tn 6079, carrying tet(M), tet(L), and erm(T) in the infant's gut, highlighting the potential for horizontal gene transfer and maternal transmission of antibiotic resistance.
Environmental macrolide-lincosamide-streptogramin and tetracycline resistant bacteria.
The paper discusses the characterization of environmental macrolide-lincosamide-streptogramin (MLS) and tetracycline resistance genes, highlighting the diversity and distribution of these genes in environmental bacteria. It identifies several MLS resistance genes such as erm(H), erm(I), erm(N), and others, as well as tetracycline resistance genes like tetA(P), tet(V), and tet(X).
Target- and Resistance-Based Mechanistic Studies with TP-434, a Novel Fluorocycline Antibiotic.
The study characterizes several tetracycline resistance genes, including tet(M), tet(K), tet(B), tet(A), and tet(X), demonstrating their roles in conferring resistance to tetracycline and related antibiotics.
Metronidazole- and Carbapenem-Resistant Bacteroides thetaiotaomicron Isolated in Rochester, Minnesota, in 2014.
The study identifies multiple antimicrobial resistance genes in a metronidazole- and carbapenem-resistant Bacteroides thetaiotaomicron isolate, including nimD, cat, tetX, tetQ, ermF, and a novel beta-lactamase gene.
The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes.
The study identifies a novel family of tetracycline-inactivating enzymes, including tetX, which confers high-level tetracycline resistance by enzymatic inactivation.
Apramycin treatment affects selection and spread of a multidrug-resistant Escherichia coli strain able to colonize the human gut in the intestinal microbiota of pigs.
The study identifies multiple AMR genes in the multidrug-resistant E. coli strain 912, including aac(3)-IV, blaTEM-1, sul2, aph(4), tet(X), and strA/B, which confer resistance to various antibiotics such as gentamicin, apramycin, sulfonamides, aminoglycosides, tetracyclines, and streptomycin.
Genome Sequence of Riemerella anatipestifer Strain RCAD0122, a Multidrug-Resistant Isolate from Ducks.
The genome sequence of Riemerella anatipestifer strain RCAD0122 reveals the presence of nine types of antibiotic resistance-associated genes, including those encoding resistance to beta-lactams, fluoroquinolones, chloramphenicol, lincosamides, sulfonamides, aminoglycosides, tetracyclines, glycopeptides, and macrolides.
Interconnected microbiomes and resistomes in low-income human habitats.
The study identified several antibiotic resistance genes, including beta-lactamases, sulfonamide-resistant dihydropteroate synthetase (Sul2), and tetracycline-inactivating enzymes (TetX), which contribute to resistance against various antibiotics in human and environmental microbiota from low-income communities.
Carbapenem-resistance and pathogenicity of bovine Acinetobacter indicus-like isolates.
The study identifies carbapenem-resistant Acinetobacter indicus-like isolates from cattle carrying the blaOXA-23 gene, along with various other AMR genes such as aac(3)-IIa, strA/B, aph(3')-Ic, sul2, floR, tet(A), tet(Y), aadA1, aadB, sul1, and tet(X).
Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes.
The study identifies and characterizes several tetracycline destructases, including tet(56), tet(X), tet(50), tet(51), and tet(55), which confer tetracycline resistance through enzymatic inactivation. These enzymes degrade tetracycline, leading to increased minimum inhibitory concentrations (MICs) in E. coli. Additionally, anhydrotetracycline is identified as an inhibitor of these enzymes, restoring tetracycline activity.
Plant Growth, Antibiotic Uptake, and Prevalence of Antibiotic Resistance in an Endophytic System of Pakchoi under Antibiotic Exposure.
The study identified the presence of tetX, blaCTX-M, sul1, and sul2 genes in the endophytic system of pakchoi under antibiotic exposure, indicating the development of antibiotic resistance in response to tetracycline, cephalexin, and sulfamethoxazole.
High diversity and abundance of cultivable tetracycline-resistant bacteria in soil following pig manure application.
The study identifies several tetracycline resistance genes (tet B, tet L, tet Z, tet M, tet O, and tet X) in cultivable tetracycline-resistant bacteria from pig manure and soil, highlighting the diversity and abundance of these genes following pig manure application.
Various Profiles of tet Genes Addition to tet(X) in Riemerella anatipestifer Isolates From Ducks in China.
The study identified and characterized multiple tetracycline resistance genes, including tet(A), tet(B), tet(M), tet(O), tet(O/W/32/O), tet(Q), and tet(X), in Riemerella anatipestifer isolates from ducks in China. The tet(X) gene was found to be the primary mechanism of tetracycline resistance.
Tetracycline-Inactivating Enzymes.
The paper reviews the structure, mechanism, and inhibition of tetracycline-destructase enzymes, highlighting their role in enzymatic inactivation of tetracyclines and the identification of new tetracycline destructase genes such as tetX, tetX1, tetX2, tet49, tet50, tet51, tet55, and tet56.
Tetracycline-Inactivating Enzymes.
The paper reviews the structure, mechanism, and inhibition of tetracycline-destructase enzymes, highlighting their role in enzymatic inactivation of tetracyclines and the identification of new tetracycline destructase genes such as tetX, tetX1, tetX2, tet49, tet50, tet51, tet55, and tet56.
Tetracycline-Inactivating Enzymes.
The paper reviews the structure, mechanism, and inhibition of tetracycline-destructase enzymes, highlighting their role in enzymatic inactivation of tetracyclines and the identification of new tetracycline destructase genes such as tetX, tetX1, tetX2, tet49, tet50, tet51, tet55, and tet56.
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life.
The study identifies family-specific antibiotic resistance genes, including ORF3 (penicillin resistance), Msr3_mel (macrolide resistance), and tetX (tetracycline resistance), which were found in child samples but not in maternal samples, indicating potential vertical transmission of these resistance traits.
Myroides odoratimimus urinary tract infection in an immunocompromised patient: an emerging multidrug-resistant micro-organism.
The study identifies multiple AMR genes in Myroides odoratimimus, including bla-OXA-347, bla-OXA-209, tetX, and cat, which contribute to its multidrug-resistant profile.
Prediction of the intestinal resistome by a three-dimensional structure-based method.
The study predicts 6,095 antibiotic resistance determinants (ARDs) in the human intestinal microbiota using a three-dimensional structure-based method called pairwise comparative modelling (PCM). Experimental validation of 71 predicted ARDs showed that they conferred resistance to various antibiotics, including beta-lactams, aminoglycosides, tetracyclines, macrolides, quinolones, sulfonamides, trimethoprim, fosfomycin, and glycopeptides.
Genome analysis provides insights into the epidemiology of infection with Flavobacterium psychrophilum among farmed salmonid fish in Sweden.
Semisynthetic Analogues of Anhydrotetracycline as Inhibitors of Tetracycline Destructase Enzymes.
The study characterizes the tetracycline destructase enzymes Tet(50), Tet(X), and Tet(X)_3, highlighting their roles in tetracycline inactivation and the development of anhydrotetracycline analogs as inhibitors.
Diversity, Virulence, and Antimicrobial Resistance in Isolates From the Newly Emerging Klebsiella pneumoniae ST101 Lineage.
The study characterizes the antimicrobial resistance genes and mutations in the emerging Klebsiella pneumoniae ST101 lineage, highlighting the presence of multiple resistance mechanisms including carbapenemases, extended-spectrum beta-lactamases, and various other resistance genes.
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent.
The study identified several tetracycline, macrolide, aminoglycoside, beta-lactam, sulfonamide, mercury, and biocide resistance genes in beef feedlots, catch basin water, soil, and urban sewage influent. Tetracycline resistance was predominant in beef production systems, while urban sewage influent showed a diverse resistome with resistance to multiple antimicrobial classes.
Characterization of Discriminatory Antimicrobial Resistance Genes in Aquatic Environments Using Machine Learning
The study identifies discriminatory antibiotic resistance genes (ARGs) using an extremely randomized tree (ERT) algorithm, highlighting genes like sul1, tet(W), and ermB as significant markers for differentiating resistomes across various aquatic environments.
Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm.
The study identified 50 unique antibiotic resistance genes (ARGs) in food waste, compost, and farm products, with a focus on aminoglycoside, tetracycline, and macrolide resistance. Key ARGs included aph(6)-1d, lmrD, mefA, mel, abeM, abeS, adeF, adeG, adeI, adeJ, adeK, emrD, sul2, tetH, tetM, tetO, tetW, and tetX, which were found in various samples and showed resistance to multiple drug classes.
Evolution of Antibiotic Resistance and the Relationship between the Antibiotic Resistance Genes and Microbial Compositions under Long-Term Exposure to Tetracycline and Sulfamethoxazole.
The study identified the expansion of tetracycline and sulfonamide resistance genes, particularly tetC and sul1, under long-term exposure to tetracycline and sulfamethoxazole in wastewater treatment systems.
Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients: a feasibility and clinical validity study.
The study identified several AMR genes using Nanopore sequencing, including mecA, blaTEM-4, blaTEM-112, blaTEM-157, blaACT-5, oqxB, tetC, ermA, erm (33), tet38, ant(4′)-lb, tetK, tetQ, sul1, dfrA, acrF, parE, mfd, mphA, aadA5, vgaC, blaACT-5, blaACT-14, mefA, mel, tetX, tetM, isaC, and aadA5, which conferred resistance to various antibiotics such as methicillin, ticarcillin, ceftazidime, erythromycin, clindamycin, tetracycline, trimethoprim-sulfamethoxazole, ciprofloxacin, and levofloxacin.
Harnessing efficient multiplex PCR methods to detect the expanding Tet(X) family of tigecycline resistance genes.
The study reports the development of an efficient multiplex PCR method to detect the expanding family of tet(X) variants, including tet(X1) to tet(X5), which are responsible for tigecycline resistance in various bacterial species.
Antimicrobial Resistance in Clostridium and Brachyspira spp. and Other Anaerobes.
The paper describes the antimicrobial resistance mechanisms in Clostridium and Brachyspira spp. and other anaerobes, focusing on the genetic basis of resistance to various antibiotics, including tetracyclines, macrolides, lincosamides, chloramphenicol, and others. It highlights the role of specific genes such as tet, erm, and cat in conferring resistance.
Co-occurrence of Plasmid-Mediated Tigecycline and Carbapenem Resistance in Acinetobacter spp. from Waterfowls and Their Neighboring Environment.
The study identified the co-occurrence of plasmid-mediated tigecycline resistance gene tet(X) and carbapenemase gene blaNDM-1 in Acinetobacter isolates from waterfowls and their neighboring environments, highlighting the spread of multidrug-resistant strains.
Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms.
The study identifies several antibiotic resistance genes, including bla CTX-M, fosA3, bla TEM, qnrS, and tet(X), which were enriched in the gut resistome of students exposed to swine farm environments. These genes conferred resistance to various antibiotics such as cephalosporins, fosfomycin, penicillins, fluoroquinolones, and tetracyclines.
Comparison of antimicrobial resistant genes in chicken gut microbiome grown on organic and conventional diet.
The study identified various antimicrobial resistance genes in the gut microbiome of chickens raised on organic and conventional diets, including beta-lactamases, multidrug efflux systems, aminoglycoside modifying enzymes, and tetracycline resistance genes. These genes were found to be more prevalent in conventional diet samples under higher antibiotic concentrations.
Occurrence and Antimicrobial Resistance Traits of Escherichia coli from Wild Birds and Rodents in Singapore.
Coexistence of bla (OXA-58) and tet (X) on a Novel Plasmid in Acinetobacter sp. From Pig in Shanghai, China.
The study identifies a novel plasmid carrying the carbapenemase gene blaOXA-58 and the tigecycline resistance gene tet(X) in an Acinetobacter sp. strain from a pig in Shanghai, China.
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes.
The study identified 17 novel tetracycline resistance genes, including enzymatic degradation, ribosomal protection, and efflux pump genes, which conferred resistance in E. coli. These genes were found in various environments and showed potential for horizontal gene transfer.
Use of Oral Tetracyclines in the Treatment of Adult Patients with Community-Acquired Bacterial Pneumonia: A Literature Review on the Often-Overlooked Antibiotic Class.
The review highlights the mechanisms of resistance to tetracyclines, including efflux pumps (tet(K), tet(L), tet(B)), ribosomal protection proteins (tet(M)), and enzymatic deactivation (tet(X)). These genes confer resistance to tetracycline, doxycycline, minocycline, and omadacycline in various bacterial pathogens.
Genomic Background and Phylogeny of cfiA-Positive Bacteroides fragilis Strains Resistant to Meropenem-EDTA.
The study identifies two new metallo-beta-lactamase genes, cfiA14b and cfiA28, in Bacteroides fragilis strains resistant to meropenem-EDTA. Additionally, various other AMR genes such as aadS, aac(3'), ermF, lnu(AN2), vatA, mef(En2), tetX, tetQ, cat, bexA, bexB, qacE, cusR, mexAB-oprM, mexJK-oprM, mexXY-oprM, acrEF-tolC, and mdtEF-tolC were characterized.
Acquisition and Spread of Antimicrobial Resistance: A tet(X) Case Study.
The study highlights the emergence and spread of tet(X) genes, which confer resistance to various tetracyclines, including next-generation ones. These genes are primarily acquired through mobile genetic elements and have been found in multiple bacterial species, including pathogens.
On-Farm Anaerobic Digestion of Dairy Manure Reduces the Abundance of Antibiotic Resistance-Associated Gene Targets and the Potential for Plasmid Transfer.
The study found that anaerobic digestion of dairy manure significantly reduced the abundance of antibiotic resistance genes, including various ESBL genes such as bla CTX-M-1, bla CTX-M-14, bla CTX-M-15, bla CTX-M-27, bla CTX-M-55, and bla PER-1, as well as other resistance genes like aac(6')-Ib-cr, aph(3')-Ib, aph(6)-Id, bla OXA-1, catB4, dfrA1, floR, lnu(G), sul2, aadA2, mph(E), msr(E), tet(C), tet(E), and tet(X).
Biosolids as a Source of Antibiotic Resistance Plasmids for Commensal and Pathogenic Bacteria.
Six unique resistance plasmids were identified that can transfer to Salmonella typhimurium, Klebsiella aerogenes, and E. coli, carrying 3-6 antibiotic resistance genes conferring resistance to 2-4 antibiotic classes.
Evolutionary Trajectory of the Tet(X) Family: Critical Residue Changes towards High-Level Tigecycline Resistance.
The study identifies five key residue changes (L282S, A339T, D340N, V350I, and K351E) in Tet(X2) that enhance tigecycline resistance, demonstrating their critical role in the molecular evolution of Tet(X) towards high-level resistance.
Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers.
The study identifies the acquisition of various antibiotic resistance genes, including blaCTX-M, qnr, and mcr-1, in Dutch travelers after international travel, highlighting the impact of travel on the gut resistome.
Chicken Manure and Mushroom Residues Affect Soil Bacterial Community Structure but Not the Bacterial Resistome When Applied at the Same Rate of Nitrogen for 3 Years.
The study identified several antibiotic resistance genes (ARGs) in chicken manure, mushroom residues, and heat-treated chicken manure, highlighting the impact of different organic manures on the soil resistome. Key findings include the enrichment of specific ARGs such as aadE, aadD, qacE1, qacH, lnuA, vatE, and tetL in soils treated with various manures, indicating the potential for ARG transfer through manure application.
A Transferable IncC-IncX3 Hybrid Plasmid Cocarrying bla(NDM-4), tet(X), and tmexCD3-toprJ3 Confers Resistance to Carbapenem and Tigecycline.
The study identifies a novel IncC-IncX3 hybrid plasmid, pNUITM-VK5_mdr, which carries the carbapenemase gene bla(NDM-4), the tigecycline-inactivating enzyme gene tet(X), and the RND efflux pump gene tmexCD3-toprJ3, contributing to high-level resistance against multiple antimicrobials including carbapenems and tigecycline.
Emergence of Plasmid-Mediated Resistance Genes tet(X) and mcr-1 in Escherichia coli Clinical Isolates from Pakistan.
The study identifies the first occurrence of tet(X) and mcr-1 in E. coli clinical isolates from Pakistan, highlighting the spread of plasmid-mediated resistance to tigecycline and colistin.
Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes.
The study identified various AMR genes in chicken microbiomes, including bacitracin resistance genes (bacA, uppP), fluoroquinolone resistance genes (cmeA, cmeB, cmeC, cmeR), and β-lactam resistance gene blaOXA-61. These genes were found in Enterobacteriaceae, Staphylococcaceae, and Campylobacteriaceae, highlighting the complex resistome dynamics influenced by antibiotic usage.
Metagenomic analysis of MWWTP effluent treated via solar photo-Fenton at neutral pH: Effects upon microbial community, priority pathogens, and antibiotic resistance genes.
Solar photo-Fenton treatment effectively removed a wide range of antibiotic resistance genes (ARGs) including those conferring resistance to sulfonamides, macrolides, tetracyclines, and beta-lactams. The study identified several ARGs such as sul1, sul2, tet(X), erm(F), mph(A), mph(E), msr(E), aadA, aph(3"), aph(6), strA, and blaBKC.
Multiple Mechanisms of Tigecycline Resistance in Enterobacteriaceae from a Pig Farm, China.
The study identifies tet(X) and tet(A) variants as key mechanisms of tigecycline resistance in Enterobacteriaceae from a pig farm in China, highlighting the role of plasmids and chromosomal elements in resistance dissemination.
Genetic Characterization of the Tetracycline-Resistance Gene tet(X) Carried by Two Epilithonimonas Strains Isolated from Farmed Diseased Rainbow Trout, Oncorhynchus mykiss in Chile.
This study reports the first identification of the tet(X) gene in Epilithonimonas strains isolated from diseased rainbow trout in Chile, highlighting the potential risk of tetracycline resistance in aquaculture settings.
Danofloxacin Treatment Alters the Diversity and Resistome Profile of Gut Microbiota in Calves.
Danofloxacin treatment altered the gut microbiota diversity and resistome profile in calves, increasing the frequency and host range of several antimicrobial resistance genes (ARGs) such as aac(6')-Ib, ant9, tet40, tetW, ermF, tetL, and tetX.
Antibiotic resistance genes in layer farms and their correlation with environmental samples.
The study identified and quantified 13 antibiotic resistance genes (ARGs) in layer manure, layer manure fertilizer, and soil samples from Guangdong Province, highlighting the high prevalence and abundance of these genes, particularly ermB, tetA, and sul2, and their potential environmental impact.
Impact of Antibiotic Therapies on Resistance Genes Dynamic and Composition of the Animal Gut Microbiota.
The study examined the impact of antibiotic therapies on the dynamics and composition of resistance genes in the animal gut microbiota, identifying several AMR genes such as blaTEM, tetA, strA, strB, intI1, tetM, mel, floR, mcr-2, oqx B, tetC, tetG, tetO, tetW, tetX, ermB, ermF, sul1, sul2, and others, which were experimentally validated in Escherichia coli.
Source Tracking and Global Distribution of the Tigecycline Non-Susceptible tet(X).
The study identifies novel tet(X) orthologs, including tet(X45), tet(X46), and tet(X47), which confer resistance to tigecycline and other tetracycline derivatives. It also traces the origins of tet(X) genes to Riemerella anatipestifer and highlights the role of Bacteroidaceae as a reservoir for these genes.
The Integrative and Conjugative Element ICECspPOL2 Contributes to the Outbreak of Multi-Antibiotic-Resistant Bacteria for Chryseobacterium Spp. and Elizabethkingia Spp.
The study identifies the integrative and conjugative element ICE Csp POL2 in the multi-antibiotic-resistant strain Chryseobacterium sp. POL2, which carries several antibiotic resistance genes including those conferring resistance to carbapenems, chloramphenicol, florfenicol, macrolides, tetracycline, and aminoglycosides. The element was found to transfer horizontally to Elizabethkingia species, contributing to the spread of multiple antibiotic resistance genes.
The Evolutionary Trend and Genomic Features of an Emerging Lineage of Elizabethkingia anophelis Strains in Taiwan.
Isolation of Elizabethkingia anophelis From COVID-19 Swab Kits.
The study identified multiple beta-lactamase genes (bla B, bla CME, bla GOB, and bla OXA), as well as the anti-macrolide gene ere(D), the sulfa-resistant gene sul2, and the anti-tetracycline gene tet(X) in Elizabethkingia anophelis isolates, indicating multidrug resistance.
Coexistence of tet(X4), mcr-1, and bla(NDM-5) in ST6775 Escherichia coli Isolates of Animal Origin in China.
The study identifies the coexistence of tet(X4), mcr-1, and bla(NDM-5) in ST6775 Escherichia coli isolates from pigeons in China, highlighting the risk of multidrug-resistant pathogens.
Prevalence and Diversity of Antibiotic Resistant Escherichia coli From Anthropogenic-Impacted Larut River.
The study identified several tetracycline and sulfonamide resistance genes, including tet(A), tet(L), tet(X), sul2, and sul3, in Escherichia coli isolates from the Larut River, highlighting the prevalence of antibiotic resistance in anthropogenically impacted aquatic environments.
Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children.
The study identified several antibiotic resistance genes (ARGs) in the gut microbiome of Bangladeshi children, including bla CTX-M, mph(A), qnrS1, mdf(A), tet(A), sul2, aadA5, tet(X), erm(X), nimE, dfrA17, bla TEM, and ant(6’)-Ia. These genes were associated with resistance to various antibiotics such as third-generation cephalosporins, azithromycin, fluoroquinolones, tetracyclines, sulfonamides, streptomycin, spectinomycin, macrolides, lincosamides, streptogramin B, nitroimidazoles, trimethoprim, penicillins, and aminoglycosides.
Detection by Whole-Genome Sequencing of a Novel Metallo-β-Lactamase Produced by Wautersiella falsenii Causing Urinary Tract Infection in Tunisia.
The study reports the first detection of a novel chromosomally located metallo-β-lactamase, EBR-like enzyme, in Wautersiella falsenii causing urinary tract infection in Tunisia. It also identified the tetX and aadS genes associated with tetracycline and aminoglycoside resistance, respectively.
Evaluating the potential of third generation metagenomic sequencing for the detection of BRD pathogens and genetic determinants of antimicrobial resistance in chronically ill feedlot cattle.
The study identified various antimicrobial resistance genes (ARGs) in metagenomic sequencing data from chronically ill feedlot cattle, including genes conferring resistance to beta-lactams, aminoglycosides, macrolides, phenicols, tetracyclines, and trimethoprim. Notably, tetH was the most frequently detected resistance gene, and several ARGs were found to be associated with integrative and conjugative elements (ICEs).
Re-establishing the utility of tetracycline-class antibiotics for current challenges with antibiotic resistance.
The paper discusses the resurgence of tetracycline-class antibiotics, highlighting their effectiveness against various bacterial infections, including those resistant to other antibiotics. It identifies key resistance mechanisms such as efflux pumps and ribosomal protection proteins, and emphasizes the importance of these antibiotics in combating multidrug-resistant pathogens.
The impacts of viral infection and subsequent antimicrobials on the microbiome-resistome of growing pigs.
The study identified ermG as a gene that increased in abundance in the feces of treated pigs compared to those that did not receive post-PRRS antimicrobials, indicating its role in macrolide, lincosamide, and streptogramin B resistance.
Emergence of plasmid-mediated tigecycline, β-lactam and florfenicol resistance genes tet(X), bla(OXA-347) and floR in Riemerella anatipestifer isolated in China.
The study identifies the plasmid pRCAD0416RA-1 carrying tet(X), bla(OXA-347), and floR genes in Riemerella anatipestifer, which confer resistance to tigecycline, β-lactams, florfenicol, and chloramphenicol.
Whole genome sequencing of the multidrug-resistant Chryseobacterium indologenes isolated from a patient in Brazil.
The study identified multiple antibiotic resistance genes and mutations in a multidrug-resistant Chryseobacterium indologenes strain, including beta-lactamases, quinolone resistance genes, tetracycline resistance genes, and efflux pumps, contributing to resistance against various antibiotics.
Antimicrobial Resistance in Chicken Waste: Characterization of AMR Genes and Mutations
The study identifies the presence of multiple antibiotic resistance genes (ARGs) in chicken waste, highlighting the risk of environmental contamination and the spread of multidrug-resistant bacteria.
Antibiotic Resistance in Bacteria-A Review.
The review discusses various mechanisms of antibiotic resistance in bacteria, including resistance genes such as blaCTX-M, ermB, tet(O), vanA, vanB, and aac(6')-Ie-aph(2")-Ia, as well as mutations in gyrA, gyrB, and 23S rRNA associated with resistance to fluoroquinolones, macrolides, and other antibiotics.
Hitherto-Unnoticed Self-Transmissible Plasmids Widely Distributed among Different Environments in Japan.
The study identified new subgroups of IncP/P-1 and PromA plasmids, including antibiotic resistance genes such as blaIMP-1, blaKPC-2, mcr-1, and various tetracycline and aminoglycoside resistance genes.
Frequency dependent growth of bacteria in living materials.
The study identifies TetX as a tetracycline resistance gene that enhances bacterial growth in hydrogel under specific shaking frequencies.
Serious Risk of Tigecycline Resistance in Escherichia coli Isolated from Swine Manure.
The study identifies the presence of various tetracycline resistance genes (TRGs) in doxycycline-resistant E. coli (DRE) strains isolated from swine manure, highlighting the significant risk of tigecycline resistance. The tetX and tet(X4) genes were found to be strongly associated with tigecycline resistance.
Detection and characterization of ESBL-producing Escherichia coli and additional co-existence with mcr genes from river water in northern Thailand.
The study identified ESBL-producing E. coli in river water in northern Thailand, with bla CTX-M-15, bla CTX-M-55, bla CTX-M-14, and bla CTX-M-27 being the most prevalent beta-lactamase genes. Additionally, mcr-1.1 and mcr-3.4 genes were found to confer resistance to colistin. Various other resistance genes were also characterized, including aac(3)-IId, aadA5, ant(3″)-Ia, aph(3″)-Ib, aph(6)-Id, aac(6′)-Ib-cr, qnrS1, mdf(A), erm(B), mph(A), floR, sul2, sul3, tet(A), tet(X), tet(M), dfrA12, dfrA14, dfrA17, cmlA1, catA2, lnu(F), and erm(42).
Distribution Patterns of Antibiotic Resistance Genes and Their Bacterial Hosts in a Manure Lagoon of a Large-Scale Swine Finishing Facility.
The study identified multiple antibiotic resistance genes (ARGs) in manure samples from a swine finishing facility, highlighting the prevalence of resistance to tetracyclines, macrolides, aminoglycosides, and other antibiotics. Key genes included tet(M), lnuA, erm(35), aadS, mphB, dfrG, vga-type ABC-F, lsa-type ABC-F, msr-type ABC-F, optrA, and others, primarily found in Firmicutes, Proteobacteria, and Bacteroidota. These genes were associated with resistance mechanisms such as target alteration, antibiotic inactivation, and efflux pumps.
Antibiotic resistance of Riemerella anatipestifer and comparative analysis of antibiotic-resistance gene detection methods.
The study identified several antibiotic resistance genes in Riemerella anatipestifer, including OXA-209, erm(F), floR, aadS, tet(X), tet(X4), RanA, RanB, and ErmF, which confer resistance to various antibiotics such as beta-lactams, macrolides, fluoroquinolones, aminoglycosides, and tetracyclines.
Correlations among Antibiotic Resistance Genes, Mobile Genetic Elements and Microbial Communities in Municipal Sewage Treatment Plants Revealed by High-Throughput Sequencing.
The study identifies various tetracycline resistance genes (tetC, tetE, tetG, tetM, tetO, tetQ, tetW, tetX), sulfonamide resistance gene (sulI), aminoglycoside resistance genes (ant(2')-Ia, ant(3')-Ia, aph(6')-Id, aph(33')-Ib, aac(6')-Ib), beta-lactam resistance genes (blaGES, blaVEB), chloramphenicol resistance gene (catB3), MLS resistance genes (ereA, ermB), and multidrug resistance genes (acrB, mexB, mexF) in municipal sewage treatment plants, highlighting their association with mobile genetic elements and microbial communities.
Antimicrobial Resistance in Salmonella from Food-Producing Animals and Carcases
The report highlights the presence of carbapenemase-producing E. coli isolates carrying bla OXA-48, bla OXA-181, and bla NDM-5 genes in pigs, bovines, and meat, indicating the need for continued monitoring and follow-up.
Distribution analysis of tetracycline resistance genes in Escherichia coli isolated from floor surface and effluent of pig slaughterhouses in Banten Province, Indonesia.
The study identified the distribution of tetracycline resistance genes (tetA, tetB, tetC, tetE, tetM, tetO, and tetX) in Escherichia coli isolates from pig slaughterhouses in Banten Province, Indonesia. The tetO gene was the most dominant in floor surface samples, while tetA was dominant in effluent samples.
Epidemiological investigation and drug resistance characteristics of Riemerella anatipestifer strains from large-scale duck farms in Shandong Province, China from March 2020 to March 2022.
The study identified multiple drug resistance genes in R. anatipestifer strains, including high prevalence of tetracycline resistance gene tet X (95.9%), macrolide resistance gene ermF (77%), and others. The strains exhibited multidrug resistance, with the highest resistance to gentamicin (77%) and enrofloxacin (73%).
Cutaneous Infection Associated With Myroides odoratimimus Bacteremia in a Diabetic Patient.
The case report identifies multidrug resistance in Myroides odoratimimus, including beta-lactamase genes bla-OXA-347 and bla-OXA-209, tetracycline resistance gene tetX, and chloramphenicol resistance gene cat.
Mobilome-driven partitions of the resistome in Salmonella.
The study identifies key antimicrobial resistance genes (ARGs) such as bla NDM, mcr, and tet(X) in Salmonella, highlighting their role in resistance to last-resort antibiotics and their association with mobile genetic elements (MGEs).
Detection of tetracycline resistance genes and their diversity in Escherichia coli isolated from pig farm waste in Banten province, Indonesia.
The study identified several tetracycline resistance genes, including tetA, tetB, tetC, tetM, tetO, and tetX, in Escherichia coli isolated from pig farm waste in Banten province, Indonesia. tetX and tetO were the most prevalent genes, with high frequencies detected in both solid waste and wastewater samples.
Monooxygenases and Antibiotic Resistance: A Focus on Carbapenems.
This review discusses the role of flavin-dependent monooxygenases (FMOs) and Baeyer-Villiger monooxygenases (BVMOs) in antibiotic resistance, focusing on their mechanisms in modifying antibiotics such as tetracyclines, rifamycins, and sulfonamides. Key genes like TetX, MabTetX, Tet56, RIFMO, SadA, SadB, SulX, and SulR were identified as conferring resistance through enzymatic modifications.
Monooxygenases and Antibiotic Resistance: A Focus on Carbapenems.
This review discusses the role of flavin-dependent monooxygenases (FMOs) and Baeyer-Villiger monooxygenases (BVMOs) in antibiotic resistance, focusing on their mechanisms in modifying antibiotics such as tetracyclines, rifamycins, and sulfonamides. Key genes like TetX, MabTetX, Tet56, RIFMO, SadA, SadB, SulX, and SulR were identified as conferring resistance through enzymatic modifications.
Characterization of Riemerella anatipestifer Strains Isolated from Various Poultry Species in Poland.
The study identified several AMR genes in R. anatipestifer isolates, including aminoglycoside resistance genes (aph(3′)-VII, aac(3′)-IV, aadA, strA/strB), tetracycline resistance genes (tet(A), tet(B), tet(X)), erythromycin resistance gene (ermF), chloramphenicol resistance gene (cmlA), beta-lactam resistance gene (bla TEM), and sulfonamide resistance gene (sulI).
Shotgun Metagenomics-Guided Prediction Reveals the Metal Tolerance and Antibiotic Resistance of Microbes in Poly-Extreme Environments in the Danakil Depression, Afar Region.
The study identified numerous antibiotic resistance genes (ARGs) and metal resistance genes (MRGs) in the metagenomes of Lake Afdera and the Assale salt plain in the Danakil Depression. Key ARGs included beta-lactamases (ACC-1, OXA-58, OXA-363, OXA-212, NDM-17, OXA-134, ACT-29, LRA-19), efflux pumps (emrB, abeM, abeS, mgrA, adeJ, MexC, adeL, adeH), sulfonamide resistance genes (sul1, sul2), tetracycline resistance genes (tet39, tetX, tetK), and others. MRGs included copper resistance genes (copC, copD), cadmium resistance gene (cadD), mercury resistance gene (merA), chromate resistance genes (chrB, chrA), nickel-cobalt-cadmium resistance genes (nccA, nccB), cobalt-zinc-cadmium resistance gene (czcD), arsenic resistance gene (arsO), lead resistance gene (pbrA), and mercury resistance genes (merB, merR, MIR).
Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids.
The study identified numerous antibiotic resistance genes (ARGs) in the rumen of goat kids, highlighting the dynamic nature of the resistome influenced by age and diet. Key ARGs included RPOB, GYRA, GYRBA, ROB, MDTF, ACRF, ACRB, MGTA, MLS23S, TUFAB, TET44, TET32, APH2-DPRIME, SAT, BRO, TETQ, ERMF, NIMJ, ACI, MEFA, RRSC, RRSH, CAP16S, TETX, LNUC, TETW, TETO, and TET40, which were associated with resistance to various antibiotics such as drugs, MLS, tetracyclines, and others.
Whole-genome sequencing and analysis of Chryseobacterium arthrosphaerae from Rana nigromaculata.
The study identified 10 antibiotic resistance genes in Chryseobacterium arthrosphaerae strain FS91703, including genes conferring resistance to folate pathway inhibitors, penicillins, cephalosporins, carbapenems, phenicols, tetracyclines, and erythromycin. Additionally, two multidrug-resistant efflux pump genes, adeG and farA, were detected.
Molecular mechanisms of tigecycline-resistance among Enterobacterales.
The paper reviews the molecular mechanisms of tigecycline resistance in Enterobacterales, highlighting the roles of efflux pumps, tet genes, and other resistance mechanisms. It identifies several tigecycline resistance genes, including tet(X), tet(X1), tet(X2), tet(X3), tet(X4), tet(M), tet(A), tet(B), tet(Y), and others, along with their associated resistance profiles.
Molecular mechanisms of tigecycline-resistance among Enterobacterales.
The paper reviews the molecular mechanisms of tigecycline resistance in Enterobacterales, highlighting the roles of efflux pumps, tet genes, and other resistance mechanisms. It identifies several tigecycline resistance genes, including tet(X), tet(X1), tet(X2), tet(X3), tet(X4), tet(M), tet(A), tet(B), tet(Y), and others, along with their associated resistance profiles.
Chlorogenic acid attenuates tet (X)-mediated doxycycline resistance of Riemerella anatipestifer.
The study identifies tet(X), tet(A), and tet(O) as key tetracycline resistance genes in Riemerella anatipestifer, demonstrating their role in doxycycline resistance. Chlorogenic acid was found to reduce the expression of these genes and enhance susceptibility to doxycycline.
Comparative resistomics analysis of multidrug-resistant Chryseobacteria.
The study identifies several AMR genes in multidrug-resistant Chryseobacteria, including aadS, blaCGA, blaCGB, blaIND, catB11, ranA, ranB, rosA, and tetX, which confer resistance to various antibiotics. These genes are potentially intrinsic and show high transmissibility among Chryseobacteria and other Bacteroidota species.
Metagenomic Investigation of the Short-Term Temporal and Spatial Dynamics of the Bacterial Microbiome and the Resistome Downstream of a Wastewater Treatment Plant in the Iskar River in Bulgaria.
The study identified various antimicrobial resistance genes (ARGs) in the Iskar River downstream of a wastewater treatment plant (WWTP), including genes conferring resistance to macrolides, tetracyclines, beta-lactams, sulfonamides, and carbapenems. Notably, the carbapenemase genes bla OXA-58 and bla IMP-33-like were detected, which are typically associated with clinical settings.
Engineering probiotic Escherichia coli Nissle 1917 to block transfer of multiple antibiotic resistance genes by exploiting a type I CRISPR-Cas system.
The study demonstrates that the type I-E CRISPR-Cas3 system can be used to block the transfer of multiple antibiotic resistance genes (ARGs) in Escherichia coli Nissle 1917 (EcN).
Biofilm enhanced the mitigations of antibiotics and resistome in sulfadiazine and trimethoprim co-contaminated soils.
The study identifies several AMR genes, including aadA7, aac(6')-II, aac(3)-iid, aadD, tetA, tetM, tetX, and sul2, in Arthrobacter sp. D2, which are involved in resistance to aminoglycosides, tetracyclines, and sulfonamides. These genes were experimentally validated using high-throughput qPCR analysis.
Impact of doxycycline post-exposure prophylaxis for sexually transmitted infections on the gut microbiome and antimicrobial resistome.
The study found that doxy-PEP use over 6 months significantly increased the proportion and expression of tetracycline resistance genes in the gut microbiome, with no significant changes in other antibiotic resistance gene classes.
The characterization of outer membrane vesicles (OMVs) and their role in mediating antibiotic-resistance gene transfer through natural transformation in Riemerella anatipestifer.
Outer membrane vesicles (OMVs) from Riemerella anatipestifer strain CH-1 were shown to transfer antibiotic resistance genes (ARGs) and plasmids to the sensitive strain RA ATCC11845 through natural transformation, leading to increased resistance to erythromycin, tetracycline, and aztreonam.
Unveiling the silent threat: A comprehensive review of Riemerella anatipestifer - From pathogenesis to drug resistance.
This review highlights the pathogenesis, virulence factors, and antibiotic resistance genes of Riemerella anatipestifer, emphasizing its significance in poultry farming and the need for further research on its resistance mechanisms.
Occurrence and Drivers of Antibiotic Resistance Genes Carried by Bacteriophages in Soils Following Different Fertilization Treatments.
The study identified 19 pARG subtypes in soils with different fertilization treatments, highlighting the impact of organic fertilizers on the diversity and abundance of antibiotic resistance genes carried by bacteriophages.
Genomic analysis reveals two dominant strains of Ornithobacterium rhinotracheale in Austria and Hungary with distinct multidrug resistance profiles.
The study identifies distinct multidrug resistance profiles in two dominant strains of Ornithobacterium rhinotracheale from Austria and Hungary, highlighting the presence of resistance genes such as ermF, orr, tetX, and tetQ.
CapSeq for Surveillance in Environmental Samples
The study demonstrates the effectiveness of CapSeq in detecting and genotyping bacterial pathogens and antibiotic resistance genes in bovine respiratory disease (BRD) samples, highlighting the presence of various resistance genes such as bla-TEM, bla-ROB, tetM, tetQ, tetS, tetH, tetX, floR, rrs, and rrl.
Sphingolipid-mediated vesiculation in multidrug-resistant Sphingobacterium detergens under polymyxin B stress.
The study identifies two canonical antibiotic resistance genes, catA2 and tetX, in the multidrug-resistant Sphingobacterium detergens E70 strain, which confer resistance to chloramphenicol and tetracycline, respectively. Despite having few annotated ARGs, the strain shows high-level resistance to multiple antibiotics, including polymyxin B.
Omadacycline Pharmacokinetics: Characteristics, Contributing Factors, and Clinical Significance.
The paper discusses the pharmacokinetics and antibacterial activity of omadacycline, highlighting its effectiveness against various bacterial pathogens and its unique mechanisms of action against drug-resistant strains.
A quantitative characterization of antibiotic resistance and its influencing factors in hospital wastewaters across Lebanon.
The study identifies multiple antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) in hospital wastewaters across Lebanon, highlighting the prevalence of resistance to beta-lactams, aminoglycosides, tetracyclines, sulfonamides, and glycopeptides.
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