Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
penicillin-binding protein
Overview
| Protein Change | Nucleotide Change | Mechanism | Organism | Resistance To | Database | Validation Status |
|---|---|---|---|---|---|---|
| L367Q | - | single resistance variant | Klebsiella pneumoniae | Beta-lactamsCeftazidime|Avibactam | Card DatabaseReslit | Confirmed |
| D350N | - | single resistance variant | Haemophilus influenzae, Klebsiella pneumoniae, Enterobacter asburiae | Beta-lactamsAmpicillin|CephalosporinBeta-lactam+1 more | Card DatabaseReslit |
| D2N | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card Database | Established |
| F490Y | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card DatabaseReslit | Confirmed |
| A499V | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card Database | Established |
| A541T | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card DatabaseReslit | Confirmed |
| E536K | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card Database | Established |
| A50S | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card DatabaseReslit | Confirmed |
| V374L | - | single resistance variant | Helicobacter pylori | Amoxicillin | Card Database | Established |
| T438S | - | - | Staphylococcus aureus | Oxacillin | Reslit | Candidate |
| V527I | - | - | Helicobacter pylori | Amoxicillin | Reslit | Candidate |
| S357N | - | single resistance variant | Haemophilus influenzae, Enterobacter asburiae | Ampicillin|CephalosporinCephalosporin|Cephalosporins|PenicillinBeta-lactams | Card DatabaseReslit | Confirmed |
| S385T | - | single resistance variant | Haemophilus influenzae | Ampicillin|CephalosporinAmpicillinBeta-lactams | Card DatabaseReslit | Confirmed |
| L389F | - | single resistance variant | Haemophilus influenzae | Ampicillin|CephalosporinBeta-lactams | Card DatabaseReslit | Confirmed |
| A353S | - | - | - | Vancomycin | Reslit | Candidate |
| T372Q | - | - | - | Vancomycin | Reslit | Candidate |
| N385R | - | - | - | Vancomycin | Reslit | Candidate |
| T393N | - | - | - | Vancomycin | Reslit | Candidate |
| V419M | - | - | - | Vancomycin | Reslit | Candidate |
| T440A | - | - | - | Vancomycin | Reslit | Candidate |
| N453M | - | - | - | Vancomycin | Reslit | Candidate |
| S350T | - | - | - | Vancomycin | Reslit | Candidate |
| I368V | - | - | - | Vancomycin | Reslit | Candidate |
| G384T | - | - | - | Vancomycin | Reslit | Candidate |
| S391T | - | - | - | Vancomycin | Reslit | Candidate |
| D416E | - | - | - | Vancomycin | Reslit | Candidate |
| H439S | - | - | - | Vancomycin | Reslit | Candidate |
| I448F | - | - | - | Vancomycin | Reslit | Candidate |
| I354M | - | - | - | Vancomycin | Reslit | Candidate |
| T376V | - | - | - | Vancomycin | Reslit | Candidate |
| K387N | - | - | - | Vancomycin | Reslit | Candidate |
| N408K | - | - | - | Vancomycin | Reslit | Candidate |
| S429T | - | - | - | Vancomycin | Reslit | Candidate |
| D445G | - | - | - | Vancomycin | Reslit | Candidate |
| G460A | - | - | - | Vancomycin | Reslit | Candidate |
| N326D | - | - | - | Vancomycin | Reslit | Candidate |
| L359Q | - | - | - | Vancomycin | Reslit | Candidate |
| I378V | - | - | - | Vancomycin | Reslit | Candidate |
| D388G | - | - | - | Vancomycin | Reslit | Candidate |
| R412K | - | - | - | Vancomycin | Reslit | Candidate |
| T436S | - | - | - | Vancomycin | Reslit | Candidate |
| N446T | - | - | - | Vancomycin | Reslit | Candidate |
| L345I | - | - | - | Vancomycin | Reslit | Candidate |
| S364L | - | - | - | Vancomycin | Reslit | Candidate |
| V383Y | - | - | - | Vancomycin | Reslit | Candidate |
| T390E | - | - | - | Vancomycin | Reslit | Candidate |
| G415D | - | - | - | Vancomycin | Reslit | Candidate |
| S437G | - | - | - | Vancomycin | Reslit | Candidate |
| T447N | - | - | - | Vancomycin | Reslit | Candidate |
| T511S | - | - | Acinetobacter baumannii-calcoaceticus | Carbapenem | Reslit | Candidate |
| A413V | - | altered the structural loop adjacent to the active site, potentially diminishing the binding affinity of aztreonam | Klebsiella pneumoniae | Ceftazidime|Aztreonam | Reslit | Candidate |
| Y721S | - | Clostridium difficile | CarbapenemImipenem | Reslit | Candidate |
| P527S | - | reduced aztreonam binding | Pseudomonas aeruginosa | Aztreonam | Reslit | Candidate |
| A515T | - | - | - | Meropenem | Reslit | Candidate |
| A515V | - | - | Acinetobacter baumannii | MeropenemCefiderocolCefiderocol|Carbapenem | Reslit | Supported |
| H370Y | - | susceptibility | Acinetobacter baumannii | MeropenemImipenemCefiderocol|Carbapenem | Reslit | Supported |
| V613A | - | - | Staphylococcus aureus | Oxacillin | Reslit | Candidate |
| G137D | - | - | Escherichia coli | Aztreonam|Ceftazidime | Reslit | Candidate |
| G306V | - | - | Escherichia coli | Aztreonam|Ceftazidime | Reslit | Candidate |
| R199L | - | - | Escherichia coli | Aztreonam|Ceftazidime | Reslit | Candidate |
| 1del | - | - | - | Carbapenem | Reslit | Candidate |
| D563E | - | - | Staphylococcus aureus | Oxacillin | Reslit | Candidate |
| K504R | - | - | Staphylococcus aureus | Oxacillin | Reslit | Candidate |
| G167R | - | - | Staphylococcus aureus | Oxacillin | Reslit | Candidate |
| S634F | - | - | Staphylococcus aureus | Oxacillin|Cefoxitin|Penicillin | Reslit | Candidate |
| N526K | - | - | Haemophilus influenzae | Ampicillin | Reslit | Candidate |
| S230A | - | - | Haemophilus influenzae | Levofloxacin|Moxifloxacin|Garenoxacin|Tosufloxacin|Sitafloxacin | Reslit | Candidate |
| E142K | - | - | Haemophilus influenzae | Levofloxacin|Moxifloxacin|Garenoxacin|Tosufloxacin|Sitafloxacin | Reslit | Candidate |
| R517H | - | - | Haemophilus influenzae | Ampicillin | Reslit | Candidate |
| N138S | - | - | Haemophilus influenzae | Levofloxacin|Moxifloxacin|Garenoxacin|Tosufloxacin|Sitafloxacin | Reslit | Candidate |
| N526M | - | - | Haemophilus influenzae | Ampicillin | Reslit | Candidate |
| S84L | - | - | Haemophilus influenzae | Levofloxacin|Moxifloxacin|Garenoxacin|Tosufloxacin|Sitafloxacin | Reslit | Candidate |
| V497L | - | - | Clostridioides difficile | CephalosporinCefotaxime|Cefuroxime | Reslit | Candidate |
| A778V | - | - | Clostridioides difficile | Cephalosporin | Reslit | Candidate |
| N235K | - | - | Acinetobacter baumannii | Cefiderocol|Sulbactam | Reslit | Candidate |
| F533L | - | - | Pseudomonas aeruginosa | Imipenem | Reslit | Candidate |
| L169P | - | significant increase in the MIC value for CAZ/AVI | Klebsiella pneumoniae, Escherichia coli, Pseudomonas aeruginosa | Ceftazidime|Avibactam | Reslit | Candidate |
| V562L | - | single resistance variant | Haemophilus influenzae | Beta-lactams | Card Database | Established |
| - | - | Haemophilus influenzae | Ampicillin|Amoxicillin-clavulanic acid|Cefotiam|Cefdinir | Reslit | Candidate |
| - | - | Haemophilus influenzae | Ampicillin|Amoxicillin-clavulanic acid|Cefotiam|Cefdinir | Reslit | Candidate |
| I332V | - | Escherichia coli | Ceftazidime | Reslit | Candidate |
| - | - | Haemophilus influenzae | Ampicillin|Amoxicillin-clavulanic acid|Cefotiam|Cefdinir | Reslit | Candidate |
| A233T | - | Escherichia coli | Ceftazidime | Reslit | Candidate |
| - | - | Haemophilus influenzae | Ampicillin|Amoxicillin-clavulanic acid|Cefotiam|Cefdinir | Reslit | Candidate |
| - | - | Haemophilus influenzae | Ampicillin|Amoxicillin-clavulanic acid|Cefotiam|Cefdinir | Reslit | Candidate |
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| pbp3 | Reslit | 12 | Beta-lactams, Methicillin +11 | Laribacter hongkongensis +10 | Hong Kong, United States, Bronx, New York, US Metropolitan Areas, China, Switzerland, South Africa, Bangladesh | 2011, 2013, 2015, 2020, 2021, 2022, 2024, 2025 | CP002115 | - |
| PBP3 | Reslit | 8 | Cephalosporins, Carbapenem +7 | Salmonella enterica subsp. enterica serovar Bredeney +7 | Saudi Arabia, China, Sweden, India, global | 2019, 2022, 2023, 2025 | NC_011094 | - |
Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis.
The study identifies several β-lactam resistance genes, including ampC, lacA, pbp2, pbp3, pbp4a, pbp6a, and pbp7, as well as multidrug efflux pumps such as acrAB-tolC, acrAD-tolC, mdtABC-tolC, emrAB-tolC, mexAB-oprM, and others. Additionally, genes like bacA, ksgA, crcB, and rarD are implicated in resistance to bacitracin, kasugamycin, streptomycin, camphor, and chloramphenicol, respectively.
Detection of Epidemic USA300 Community-Associated Methicillin-Resistant Staphylococcus aureus Strains by Use of a Single Allele-Specific PCR Assay Targeting a Novel Polymorphism of Staphylococcus aureus pbp3.
The study identifies the pbp3 G88A and G2047A polymorphisms as highly associated with USA300 CA-MRSA strains, enabling the development of a specific allele-specific PCR assay for their detection.
Molecular mechanisms of sulbactam antibacterial activity and resistance determinants in Acinetobacter baumannii.
The study identifies pbp3 mutations as the primary mechanism of high-level resistance to sulbactam in Acinetobacter baumannii, with the wild-type pbp3 conferring susceptibility.
Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing.
The study identified various AMR genes and mutations in H. pylori isolates, including 23S rRNA mutations for clarithromycin resistance, gyrA mutations for levofloxacin resistance, pbp1, pbp2, and pbp3 mutations for amoxicillin resistance, rdxA mutations for metronidazole resistance, 16S rRNA mutations for tetracycline resistance, and rpoB mutations for rifampin resistance.
Identification of Salmonella Bredeney Resistant to Third-Generation Cephalosporins in Saudi Arabia.
The study identified Salmonella Bredeney resistant to third-generation cephalosporins in Saudi Arabia, highlighting the presence of 13 cephalosporin resistance-associated genes, including a novel gene LEN-23.
Interaction of Acinetobacter baumannii with Human Serum Albumin: Does the Host Determine the Outcome?
The study identified several antibiotic resistance genes in Acinetobacter baumannii, including clmA, pbp1, pbp3, blaPER-7, aac(6a)-Ib, ant(2n)-Ia, armA, aphA6, sul1, and arr2, which were upregulated or downregulated in response to human serum albumin (HSA) and human serum (HS).
Activity of cefepime/taniborbactam and comparators against whole genome sequenced ertapenem-non-susceptible Enterobacterales clinical isolates: CANWARD 2007-19.
The study identified several AMR genes and mutations in ertapenem-non-susceptible Enterobacterales, including carbapenemases (NDM-5, OXA-181), beta-lactamases (TEM-1B, CTX-M-71), and mutations in PBP3 and porin genes (ompC, ompF) that contribute to resistance against cefepime/taniborbactam and other beta-lactam antibiotics.
Occurrence of High Levels of Cefiderocol Resistance in Carbapenem-Resistant Escherichia coli before Its Approval in China: a Report from China CRE-Network.
High levels of cefiderocol resistance in carbapenem-resistant E. coli were observed, primarily due to the presence of NDM-5, mutations in pbp3, and a premature stop codon in cirA.
Identification and whole-genome sequencing analysis of Vibrio vulnificus strains causing pearl gentian grouper disease in China.
The study identified Vibrio vulnificus EPL 0201 biotype 2 as a multidrug-resistant strain with high pathogenicity, possessing virulence factors vvhA, rtxA, and wza, as well as resistance genes such as H-NS, TEM-1, sul1, tet, floR, parE, mprF, APH(6)-Id, APH(3'')-Ib, aadA16, and arr-3.
WYBQ-4: a New Bactericidal Agent against Methicillin-Resistant Staphylococcus aureus.
WYBQ-4 is a new bactericidal agent with potent activity against methicillin-resistant Staphylococcus aureus (MRSA). It binds to penicillin-binding proteins (PBPs), including PBP1, PBP2, PBP3, PBP4, and PBP2a, and interferes with cell wall synthesis, leading to bacterial cell death.
Responses of carbapenemase-producing and non-producing carbapenem-resistant Pseudomonas aeruginosa strains to meropenem revealed by quantitative tandem mass spectrometry proteomics.
The study identified the VIM-4 metallo-beta-lactamase as a key factor in carbapenem resistance in Pseudomonas aeruginosa strain CCUG 51971, contributing to high resistance levels against imipenem and meropenem.
Emergence of ST463 exoU-Positive, Imipenem-Nonsusceptible Pseudomonas aeruginosa Isolates in China.
The study identified bla PDC, bla OXA-50, bla OXA-50-like, bla KPC-2, and bla OXA-486 as key resistance genes in imipenem-nonsusceptible Pseudomonas aeruginosa isolates. Additionally, mutations in PBP3 (F533L) and disruptions in oprD were associated with resistance. The ST463 lineage was highlighted as a multidrug-resistant and hypervirulent strain.
Sequencing and Characterization of M. morganii Strain UM869: A Comprehensive Comparative Genomic Analysis of Virulence, Antibiotic Resistance, and Functional Pathways.
The study identified multiple antibiotic resistance genes in M. morganii strain UM869, including KpnH, PBP3, rsmA, CRP, gyrB, and qacG, which confer resistance to various classes of antibiotics such as fluoroquinolones, aminoglycosides, carbapenems, cephalosporins, and macrolides.
Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii.
The study identifies PBP3 mutations (T526S, A515V, G523V, H370Y) and an AdeJ G288S mutation as key contributors to resistance against sulbactam and sulbactam-durlobactam in Acinetobacter baumannii isolates.
Modification of the penicillin-binding-protein 3 as a source of resistance to broad-spectrum cephalosporins in Escherichia coli.
The study identifies a four amino-acid insertion (YRVP) in the PBP-3 of an E. coli strain, which contributes to resistance against broad-spectrum cephalosporins and aztreonam without the production of any acquired broad-spectrum β-lactamase.
Genome mining of Escherichia coli WG5D from drinking water source: unraveling antibiotic resistance genes, virulence factors, and pathogenicity.
The study identifies multiple antibiotic resistance genes in E. coli WG5D, including multidrug efflux pumps and genes conferring resistance to various antibiotics such as fluoroquinolones, cephalosporins, and glycopeptides.
Hypermucoviscous Multidrug-Resistant Klebsiella variicola Strain LL2208 Isolated from Chinese Longsnout Catfish (Leiocassis longirostris): Highly Similar to Human K. variicola Strains.
The study identified a multidrug-resistant hypermucoviscous Klebsiella variicola strain LL2208 isolated from Chinese longsnout catfish, which exhibits resistance to various antibiotics including penicillins, macrolides, amphenicols, lincosamides, and glycopeptides. The strain possesses 30 antimicrobial resistance genes, including blaLEN-16, ompK37, pbp3, and vanG.
Genomic features, antimicrobial resistance and pathogenicity assessment of Escherichia coli serotype O177:H51 strain JS01 isolated from a diseased chicken.
The study identified 64 AMR genes and 177 virulence factor genes in the E. coli strain JS01, highlighting its multidrug resistance and high pathogenicity.
Genomic Characterization of Pan-Drug Resistant Klebsiella pneumoniae KPNW Isolated From UTI Patient in Bangladesh.
The study identifies 42 antimicrobial resistance (AMR) genes in the pan-drug resistant Klebsiella pneumoniae isolate KPNW, including beta-lactamases (bla CTX-M-15, bla NDM-1, bla OXA-1, bla TEM-63, bla TEM-104, bla SHV-28), tetracycline resistance genes (tet(A)), and efflux pump genes (oqxA, oqxB, marA, marR, ompK37, pbp3, crp, h-ns, kpnG, kpnH, parC, rsmA). Additionally, the isolate shows resistance to polymyxin B and colistin through modifications in lipid A (eptB, arnT, lptD, msbA, vanG) and other mechanisms.
Molecular resistance mechanisms to newly approved antibiotics (2017-2025) in WHO priority pathogens.
The paper reviews molecular resistance mechanisms to newly approved antibiotics in WHO priority pathogens, identifying various beta-lactamases, efflux pumps, and target site modifications that confer resistance.
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