Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
oxygen-insensitive NADPH nitroreductase
Overview
| Candidate |
| H17Y | - | - | - | Metronidazole | Reslit | Candidate |
| Q50R | - | - | - | Metronidazole | Reslit | Candidate |
| S81L | - | - | - | Metronidazole | Reslit | Candidate |
| A118S | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| G163V | - | - | - | Metronidazole | Reslit | Candidate |
| H25R | - | - | - | Metronidazole | Reslit | Candidate |
| M56V | - | - | - | Metronidazole | Reslit | Candidate |
| P106D | - | - | - | Metronidazole | Reslit | Candidate |
| C140R | - | - | - | Metronidazole | Reslit | Candidate |
| E27T | - | - | - | Metronidazole | Reslit | Candidate |
| T58I | - | - | - | Metronidazole | Reslit | Candidate |
| P106S | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| C140G | - | - | - | Metronidazole | Reslit | Candidate |
| A193V | - | - | - | Metronidazole | Reslit | Candidate |
| A37V | - | - | - | Metronidazole | Reslit | Candidate |
| L62S | - | - | - | Metronidazole | Reslit | Candidate |
| V111A | - | - | - | Metronidazole | Reslit | Candidate |
| S158M | - | - | - | Metronidazole | Reslit | Candidate |
| E194G | - | - | - | Metronidazole | Reslit | Candidate |
| R14K | - | - | - | Metronidazole | Reslit | Candidate |
| S45N | - | - | - | Metronidazole | Reslit | Candidate |
| K63Q | - | - | - | Metronidazole | Reslit | Candidate |
| P115R | - | - | - | Metronidazole | Reslit | Candidate |
| G163D | - | - | - | Metronidazole | Reslit | Supported |
| A206T | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| M21A | - | Helicobacter pylori | Metronidazole | Reslit | Supported |
| G189S | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| K64N | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| A68E | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| L13fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| C49T | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| G60A | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| Q50Ter | - | nonsense mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| A118T | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| G47A | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| T38fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| C148Y | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| G112fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| A67V | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| L210V | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| C273T | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| G189C | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| A1G | - | single resistance variant | Helicobacter pylori | Metronidazole | Card Database | Established |
| S108A | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| S93N | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| L156F | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| R16H | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| R16C | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| R176C | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| C19Y | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| P51L | - | - | - | Metronidazole | Reslit | Candidate |
| G163S | - | - | - | Metronidazole | Reslit | Candidate |
| M21R | - | - | - | Metronidazole | Reslit | Candidate |
| C87Y | - | - | - | Metronidazole | Reslit | Candidate |
| M21V | - | - | - | Metronidazole | Reslit | Candidate |
| C184Y | - | - | - | Metronidazole | Reslit | Candidate |
| M21T | - | - | - | Metronidazole | Reslit | Candidate |
| C140Y | - | - | - | Metronidazole | Reslit | Candidate |
| R90K | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| H97T | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| D59N | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| R155Q | - | - | - | Metronidazole | Reslit | Candidate |
| R131K | - | - | Helicobacter pylori | Metronidazole | Reslit | Supported |
| A80T | - | - | - | Metronidazole | Reslit | Candidate |
| Q197K | - | - | - | Metronidazole | Reslit | Candidate |
| V204I | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| Y46H | - | - | - | Metronidazole | Reslit | Candidate |
| R16Y | - | - | - | Metronidazole | Reslit | Candidate |
| S43W | - | - | - | Metronidazole | Reslit | Candidate |
| G145R | - | - | - | Metronidazole | Reslit | Candidate |
| S18F | - | loss of function | Escherichia coli, Helicobacter pylori | Metronidazole | Reslit | Candidate |
| G122R | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| R90S | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| V145A | - | - | - | Metronidazole | Reslit | Candidate |
| G98S | - | - | Helicobacter pylori | Metronidazole | Reslit | Supported |
| A200T | - | - | - | Metronidazole | Reslit | Candidate |
| V123T | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| P106L | - | - | - | Metronidazole | Reslit | Candidate |
| T219A | - | - | - | Metronidazole | Reslit | Candidate |
| A183V | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| Q6H | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| V199A | - | - | - | Metronidazole | Reslit | Candidate |
| S30R | - | - | - | Metronidazole | Reslit | Candidate |
| T208A | - | - | - | Metronidazole | Reslit | Candidate |
| V172I | - | - | Helicobacter pylori | Metronidazole | Reslit | Supported |
| T31E | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| H97Y | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| P49L | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| Q5* | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| Q50* | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| S714L | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| G162R | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| E175Q | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| T49M | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| L62V | - | - | Helicobacter pylori | Metronidazole | Reslit | Supported |
| S88P | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| P166S | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| H53R | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| P166A | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| E75Q | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| V151L | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| G98N | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| Y47C | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| A67T | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| I160F | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| H97I | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| D59S | - | loss of function, single resistance variant | Helicobacter pylori, Escherichia coli | Metronidazole | Card DatabaseReslit | Confirmed |
| D95N | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| T184G | - | single resistance variant | Helicobacter pylori | Metronidazole | Card DatabaseReslit | Confirmed |
| G210V | - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| N172I | - | - | - | Metronidazole | Reslit | Candidate |
| A108S | - | - | - | Metronidazole | Reslit | Candidate |
| R53H | - | - | - | Metronidazole | Reslit | Candidate |
| K73R | - | - | - | Metronidazole | Reslit | Candidate |
| E133K | - | - | - | Metronidazole | Reslit | Candidate |
| M56I | - | - | - | Metronidazole | Reslit | Candidate |
| I172V | - | - | - | Metronidazole | Reslit | Candidate |
| K81N | - | - | - | Metronidazole | Reslit | Candidate |
| E75K | - | - | - | Metronidazole | Reslit | Candidate |
| E73G | - | - | - | Metronidazole | Reslit | Candidate |
| N84K | - | - | - | Metronidazole | Reslit | Candidate |
| G74E | - | - | - | Metronidazole | Reslit | Candidate |
| S118A | - | - | - | Metronidazole | Reslit | Candidate |
| V62L | - | - | - | Metronidazole | Reslit | Candidate |
| T79S | - | - | - | Metronidazole | Reslit | Candidate |
| I172N | - | - | - | Metronidazole | Reslit | Candidate |
| C16H | - | - | - | Metronidazole | Reslit | Candidate |
| S150G | - | - | - | Metronidazole | Reslit | Candidate |
| P51T | - | - | - | Metronidazole | Reslit | Candidate |
| S43L | - | - | - | Metronidazole | Reslit | Candidate |
| K127R | - | - | - | Metronidazole | Reslit | Candidate |
| E138K | - | - | - | Metronidazole | Reslit | Candidate |
| N98S | - | - | - | Metronidazole | Reslit | Candidate |
| E74G | - | - | - | Metronidazole | Reslit | Candidate |
| S79N | - | loss of function | Escherichia coli, Helicobacter pylori | Metronidazole | Reslit | Candidate |
| L62I | - | loss of function | Escherichia coli, Helicobacter pylori | Metronidazole | Reslit | Candidate |
| A187V | - | loss of function | Escherichia coli, Helicobacter pylori | Metronidazole | Reslit | Candidate |
| A96fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| A190fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| A50Ter | - | nonsense mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| N73Ter | - | nonsense mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| Q5Ter | - | nonsense mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| T62fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| D59Ter | - | nonsense mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| C18fs | - | frameshift mutation | Helicobacter pylori | Metronidazole | Card Database | Established |
| - | - | - | Metronidazole | Reslit | Candidate |
| - | - | - | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| - | - | Helicobacter pylori | Metronidazole | Reslit | Candidate |
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| rdxA | Reslit | 40 | Metronidazole | Helicobacter pylori NCTC11637 +8 | France|North Africa, India, The Gambia, Malaysia, Iran, Cambodia, Indonesia|Nepal|Nicaragua|Japan, Bronx, New York, Democratic Republic of Congo|Democratic Republic of the Congo, Mexico, United States, Myanmar, Shanghai, China, Morocco, Pakistan, South Korea, Hainan Province, China|China, Global, Europe|Portugal, Vietnam, Eastern China|China | 1999, 2000, 2001, 2002, 2003, 2008, 2011, 2013, 2016, 2019, 2020, 2021, 2022, 2023, 2024, 2025 | AF217727|AF217728|AF217729|AF217730|AF217731|AF217732|AF217733|AF217734|AF217735|AF220110|AF220111|AF220112|AF220113|AF220114|AF220115|AF220116|AF220117|AF220118|AF220119|AF220120|AF202219|AF202220|AF202221|AF202222|AF202223|AF202224|AF202225|AF222807|AF222808|AF222809|AF239991|AF239992|AF239993|AF239994 | - |
| RdxA | Reslit | 1 | Metronidazole | Helicobacter pylori | Asia|Europe|Africa|Americas|America | 2023 | - | - |
Insertion of mini-IS605 and deletion of adjacent sequences in the nitroreductase (rdxA) gene cause metronidazole resistance in Helicobacter pylori NCTC11637.
The study identifies that metronidazole resistance in Helicobacter pylori NCTC11637 is caused by the inactivation of the rdxA gene through the insertion of mini-IS605 and deletion of adjacent sequences.
Frequent association between alteration of the rdxA gene and metronidazole resistance in French and North African isolates of Helicobacter pylori.
The study identifies mutations in the rdxA gene as a frequent cause of metronidazole resistance in Helicobacter pylori isolates from France and North Africa.
Distinctiveness of genotypes of Helicobacter pylori in Calcutta, India.
The study identified that approximately 90% of Helicobacter pylori strains from Calcutta, India, are resistant to metronidazole (MTZ).
Analysis of rdxA and involvement of additional genes encoding NAD(P)H flavin oxidoreductase (FrxA) and ferredoxin-like protein (FdxB) in metronidazole resistance of Helicobacter pylori.
The study identifies fdxB, frxA, and rdxA as genes involved in metronidazole resistance in Helicobacter pylori through inactivation analysis, complementation, and enzyme assays.
Mouse-colonizing Helicobacter pylori SS1 is unusually susceptible to metronidazole due to two complementary reductase activities.
The study identifies that the Helicobacter pylori SS1 strain is highly susceptible to metronidazole due to the combined activity of the rdxA and frxA genes, which encode nitroreductases. Inactivation of both genes is necessary for the development of metronidazole resistance.
Spontaneous mutations that confer antibiotic resistance in Helicobacter pylori.
The study identifies mutations in the rpoB, 23S rRNA, gyrA, and rdxA genes that confer resistance to rifampin, clarithromycin, ciprofloxacin, and metronidazole, respectively, in Helicobacter pylori.
DNA sequence analysis of rdxA and frxA from 12 pairs of metronidazole-sensitive and -resistant clinical Helicobacter pylori isolates.
The study identifies that inactivation of rdxA and frxA through nonsense or frameshift mutations leads to metronidazole resistance in Helicobacter pylori.
Differentiation of metronidazole-sensitive and -resistant clinical isolates of Helicobacter pylori by immunoblotting with antisera to the RdxA protein.
The study shows that the absence of the RdxA protein correlates with metronidazole resistance in Helicobacter pylori, indicating that inactivation of the rdxA gene is a key mechanism of resistance.
Enzymes Associated with Reductive Activation and Action of Nitazoxanide, Nitrofurans, and Metronidazole in Helicobacter pylori.
The study identifies three enzymes involved in the reductive activation of nitazoxanide, nitrofurans, and metronidazole in Helicobacter pylori: RdxA, FrxA, and Por. These enzymes play a critical role in the antimicrobial activity of these drugs.
Characterization of the genes rdxA and frxA involved in metronidazole resistance in Helicobacter pylori.
The study identified mutations in the rdxA and frxA genes as contributing to metronidazole resistance in Helicobacter pylori, with some cases showing resistance without mutations in these genes.
Who's Winning the War? Molecular Mechanisms of Antibiotic Resistance in Helicobacter pylori.
The paper discusses the molecular mechanisms of antibiotic resistance in Helicobacter pylori, focusing on mutations in the 23S rRNA gene, rdxA, frxA, PBP1, and PBP4 that confer resistance to clarithromycin, metronidazole, and amoxicillin.
Characterisation of the genes encoding resistance to metronidazole (rdxA and frxA) and clarithromycin (the 23S-rRNA genes) in South African isolates of Helicobacter pylori.
Antimicrobial susceptibility and resistance patterns among Helicobacter pylori strains from The Gambia, West Africa.
The study identified rdxA gene mutations as a key factor in metronidazole resistance among Helicobacter pylori strains in The Gambia.
Contingency nature of Helicobacter bizzozeronii oxygen-insensitive NAD(P)H-nitroreductase (HBZC1_00960) and its role in metronidazole resistance.
The study identifies the rdxA gene in Helicobacter bizzozeronii as a contingency gene involved in metronidazole resistance through a frame length extension of the C-terminal cysteine-containing conserved region. Loss of function mutations in rdxA, particularly the disruption of the conserved region IACLXALGK, are sufficient to produce clinically significant resistance to metronidazole.
Validation of a High-Throughput Multiplex Genetic Detection System for Helicobacter pylori Identification, Quantification, Virulence, and Resistance Analysis.
The study validated a high-throughput multiplex genetic detection system (HMGS) for identifying, quantifying, and analyzing virulence and drug resistance genes in Helicobacter pylori. Four drug resistance genes (23S rRNA, rdxA, gyrA, and pbp1A) were characterized for their roles in resistance to clarithromycin, metronidazole, levofloxacin, and amoxicillin, respectively.
Molecular and Proteomic Analysis of Levofloxacin and Metronidazole Resistant Helicobacter pylori.
The study identified mutations in gyrA and gyrB associated with levofloxacin resistance and a mutation in frxA associated with metronidazole resistance in Helicobacter pylori.
Genetic basis for metronidazole and clarithromycin resistance in Helicobacter pylori strains isolated from patients with gastroduodenal disorders.
Mutational inactivation of rdxA and frxA and point mutations in the 23S rRNA are the primary causes of metronidazole and clarithromycin resistance in H. pylori. Overexpression of the efflux pump gene hefA contributes to multidrug resistance.
A Next-Generation Sequencing-Based Approach to Identify Genetic Determinants of Antibiotic Resistance in Cambodian Helicobacter pylori Clinical Isolates.
The study identified genetic determinants of antibiotic resistance in Cambodian Helicobacter pylori clinical isolates, including mutations in 23S rRNA for clarithromycin resistance, gyrA for levofloxacin resistance, pbp1 for amoxicillin resistance, and rdxA for metronidazole resistance.
Characterization of Helicobacter pylori strains and their antimicrobial resistance mechanisms
The study identifies several genes and mutations associated with antimicrobial resistance in H. pylori, including rdxA and frxA for metronidazole resistance, 23S rRNA for clarithromycin resistance, gyrA for levofloxacin resistance, and rpoB for rifampicin resistance.
Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing.
The study identified various AMR genes and mutations in H. pylori isolates, including 23S rRNA mutations for clarithromycin resistance, gyrA mutations for levofloxacin resistance, pbp1, pbp2, and pbp3 mutations for amoxicillin resistance, rdxA mutations for metronidazole resistance, 16S rRNA mutations for tetracycline resistance, and rpoB mutations for rifampin resistance.
Phenotypic and Genotypic Assessment of Antibiotic Resistance and Genotyping of vacA, cagA, iceA, oipA, cagE, and babA2 Alleles of Helicobacter pylori Bacteria Isolated from Raw Meat.
The study identified antibiotic resistance genes rdxA, pbp1A, gyrA, and cla in Helicobacter pylori isolates from raw meat, contributing to resistance against metronidazole, amoxicillin, levofloxacin, and clarithromycin.
Next-Generation Sequencing of the Whole Bacterial Genome for Tracking Molecular Insight into the Broad-Spectrum Antimicrobial Resistance of Helicobacter pylori Clinical Isolates from the Democratic Republic of Congo.
The study identified several genes and mutations associated with antimicrobial resistance in Helicobacter pylori clinical isolates from the Democratic Republic of Congo, including pbp1A, 23S_rRNA, gyrA, gyrB, rdxA, and frxA, which are linked to resistance against amoxicillin, clarithromycin, levofloxacin, and metronidazole.
Phenotypic and Genotypic Antibiotic Resistance Patterns in Helicobacter pylori Strains From Ethnically Diverse Population in México.
The study identified mutations in 23S rRNA, gyrA, and rdxA genes associated with resistance to clarithromycin, levofloxacin, and metronidazole in Helicobacter pylori strains from Mexico. The prevalence of these mutations varied over time and between different populations.
FBPAII and rpoBC, the Two Novel Secreted Proteins Identified by the Proteomic Approach from a Comparative Study between Antibiotic-Sensitive and Antibiotic-Resistant Helicobacter pylori-Associated Gastritis Strains.
The study identifies FBPAII and rpoBC as novel secreted proteins in antibiotic-sensitive Helicobacter pylori strains, highlighting their potential roles in antibiotic resistance mechanisms.
Effect of Temperature on Metronidazole Resistance in Helicobacter pylori.
The study shows that increasing the temperature to 41°C reduces metronidazole resistance in Helicobacter pylori, with significant downregulation of rdxA and sod genes, and upregulation of fur.
Comparison of Culture With Antibiogram to Next-Generation Sequencing Using Bacterial Isolates and Formalin-Fixed, Paraffin-Embedded Gastric Biopsies.
The study compared culture-based and molecular-based susceptibility testing for six antibiotics in H. pylori using clinical isolates and formalin-fixed, paraffin-embedded gastric biopsies. It found that next-generation sequencing accurately predicted resistance to clarithromycin, levofloxacin, rifabutin, and tetracycline, while showing fair agreement for metronidazole and amoxicillin.
Next-Generation Sequencing-Based Study of Helicobacter pylori Isolates from Myanmar and Their Susceptibility to Antibiotics.
The study identified several mutations in genes associated with antibiotic resistance in Helicobacter pylori isolates from Myanmar, including pbp1-A for amoxicillin, 23S rRNA for clarithromycin, gyrA and gyrB for levofloxacin, and rdxA and frxA for metronidazole.
Correlation Analysis Among Genotype Resistance, Phenotype Resistance, and Eradication Effect After Resistance-Guided Quadruple Therapies in Refractory Helicobacter pylori Infections.
The study identified mutations in 23S rRNA, PBP-1A, gyrA, and rdxA genes in H. pylori strains, which were associated with resistance to clarithromycin, amoxicillin, levofloxacin, and metronidazole, respectively.
Genome-wide analysis of antibiotic resistance genes and mutations in Helicobacter pylori strains
The study identified several AMR genes and mutations in H. pylori strains associated with resistance to clarithromycin, levofloxacin, and metronidazole. Key findings include mutations in 23S rRNA, gyrA, gyrB, rdxA, frxA, and fdxB genes that confer resistance to these antibiotics.
Direct Detection of Antibiotic Resistance in Chinese Helicobacter pylori Clinical Isolates by Sequencing-Based Approach.
The study identified mutations in GyrA, GyrB, Pbp1, rdxA, and 23S rRNA as the genetic determinants of resistance to levofloxacin, amoxicillin, metronidazole, and clarithromycin in Helicobacter pylori clinical isolates.
Revealing the novel effect of Jinghua Weikang capsule against the antibiotic resistance of Helicobacter pylori.
Jinghua Weikang capsule (JWC) reverses metronidazole (MTZ) resistance in H. pylori 26,695–16R by targeting biofilm formation and efflux pump gene expression. A G210T point mutation in the rdxA gene was identified as the cause of MTZ resistance.
Helicobacter pylori resistance to metronidazole and its association with virulence factors in a Moroccan population.
The study identified a high prevalence of metronidazole resistance in H. pylori isolates from Morocco, with 62.7% of isolates showing resistance. Deletions in the rdxA gene were associated with metronidazole resistance.
Antibiotic resistance in Helicobacter pylori: From potential biomolecular mechanisms to clinical practice.
The paper discusses the mechanisms of antibiotic resistance in Helicobacter pylori, focusing on genes and mutations associated with resistance to amoxicillin, clarithromycin, furazolidone, levofloxacin, and metronidazole. Key findings include the identification of specific mutations in 23S rRNA, gyrA, gyrB, PBP1A, porD, oorD, RdxA, and other genes that contribute to resistance against these antibiotics.
Identification, Genome Sequencing, and Characterizations of Helicobacter pylori Sourced from Pakistan.
The study identified antibiotic resistance genes such as gyrA, cmeDEF, rdxA, and frxA in Helicobacter pylori strains from Pakistan, highlighting the prevalence of resistance to metronidazole, clarithromycin, and levofloxacin.
Development and validation of next-generation sequencing panel for personalized Helicobacter pylori eradication treatment targeting multiple species.
The study developed a next-generation sequencing panel (NGS-PHET) to identify antibiotic resistance genes and mutations in Helicobacter pylori, enabling personalized eradication treatment. Key findings include resistance-conferring variants in hprrna23s, hprrna16s, pbp1, rdxa, frxa, frxb, gyra, and gyrb, along with caga positivity.
Prevalence of metronidazole resistance and Helicobacter pylori infection in Moroccan children: a cross-sectional study.
The study identified a high prevalence of metronidazole resistance in Helicobacter pylori isolates from Moroccan children, primarily due to mutations in the rdxA gene.
Helicobacter pylori resistance in Hainan Province, China: investigating phenotypes and genotypes through whole-genome sequencing.
The study identified several AMR genes and mutations in H. pylori strains from Hainan Province, China, including 23S rRNA (A2143G) for clarithromycin resistance, gyrA (N87K, D91N) for levofloxacin resistance, rdxA (R16H/C, M21A) for metronidazole resistance, pbp1A (Thr593Ala, Thr556Ser, Asn562Tyr, Phe366Leu, Val374Leu, Ser414Arg) for amoxicillin resistance, 16S rRNA (AGA926_928>GGA, AGA926_928>AGC, AGA926_928>GGC, AGA926_928>TGA) for tetracycline resistance, porD (A356G, C357T, G353A) and oorD (A41G, A122G, A335G, C349A, C349G) for furazolidone resistance.
Assessment for antibiotic resistance in Helicobacter pylori: A practical and interpretable machine learning model based on genome-wide genetic variation.
The study developed a machine learning model to predict antibiotic resistance in Helicobacter pylori using genome-wide genetic variation data, identifying key mutations and genes associated with resistance to metronidazole, clarithromycin, levofloxacin, amoxicillin, and multidrug resistance.
Detection of Helicobacter pylori and the Genotypes of Resistance to Clarithromycin, Fluoroquinolones, and Metronidazole in Gastric Biopsies: An In Silico Analysis to Help Understand Antibiotic Resistance.
The study identified various mutations in the gyrA and rdxA genes associated with resistance to fluoroquinolones and metronidazole in Helicobacter pylori, respectively. These mutations were analyzed through in silico methods to understand their potential roles in antibiotic resistance.
Identification of genetic determinants of antibiotic resistance in Helicobacter pylori isolates in Vietnam by high-throughput sequencing.
The study identified several mutations in 23S rRNA, gyrA, pbp1 A, and rdxA genes associated with resistance to clarithromycin, levofloxacin, amoxicillin, and metronidazole in H. pylori isolates from Vietnam.
Genomic insights into antibiotic resistance, virulence traits and phylogenetic lineages of 141 clinical Helicobacter pylori isolates from Eastern China.
The study identified several AMR genes and mutations in 141 clinical Helicobacter pylori isolates from Eastern China, including 23S rRNA (A2143G), infB (C110T), gyrA (T261A), gyrB (G1033A), pbp1A (1785_1786insAGC), rdxA (G278A), frxA (T184A), recA (G946A), 16S rRNA (A928C), and oorD (G22A) associated with resistance to clarithromycin, levofloxacin, amoxicillin, metronidazole, tetracycline, and furazolidone.
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