Comparing Long-Read Assemblers to Explore the Potential of a Sustainable Low-Cost, Low-Infrastructure Approach to Sequence Antimicrobial Resistant Bacteria With Oxford Nanopore Sequencing.

PMID: 353083842022

Key Findings

The study identifies the presence of the bla KPC gene in Klebsiella pneumoniae isolates using long-read sequencing, highlighting its role in carbapenem resistance.

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15gene entries

0mutation entries

AMR Genes

Gene Name	Alleles	Encodes	Confers Resistance To	Organisms	Database	Validation Status
ant(6)-Ia	1	Aminoglycoside adenyltransferase	Aminoglycoside	Streptococcus agalactiae	Reslit	-
aph(3')-IIIa	1	Aminoglycoside phosphotransferase	Aminoglycoside	Streptococcus agalactiae	Reslit	-
blaKPC	2	Beta-lactamase	Carbapenem	Klebsiella pneumoniae

Browse Papers

Comparing Long-Read Assemblers to Explore the Potential of a Sustainable Low-Cost, Low-Infrastructure Approach to Sequence Antimicrobial Resistant Bacteria With Oxford Nanopore Sequencing.

AMR Genes